Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001335.1 Corchorus capsularis cultivar CVL-1 contig01335, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36


Found at i:130 original size:2 final size:2

Alignment explanation


    Indices: 123--157  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

        113 TAACAATACA

                                                                
        123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        158 ACTTAATAAG


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:706 original size:20 final size:20

Alignment explanation


    Indices: 681--729  Score: 98
    Period size: 20  Copynumber: 2.5  Consensus size: 20

        671 TGATCCTTAG

                                
        681 GTGCTTTTGCGTTTTCAAAA
          1 GTGCTTTTGCGTTTTCAAAA

                                
        701 GTGCTTTTGCGTTTTCAAAA
          1 GTGCTTTTGCGTTTTCAAAA

                     
        721 GTGCTTTTG
          1 GTGCTTTTG

        730 AACATTAAAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   29  1.00

ACGTcount: A:0.16, C:0.14, G:0.22, T:0.47


Consensus pattern (20 bp):   
GTGCTTTTGCGTTTTCAAAA
Done.