Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013353.1 Corchorus capsularis cultivar CVL-1 contig13374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5961
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.29
Found at i:432 original size:27 final size:27
Alignment explanation
Indices: 355--460 Score: 121
Period size: 26 Copynumber: 4.0 Consensus size: 27
345 ATTAGTAATT
* *
355 AGTAATCAGTAAAAAGAGTAAG-AAAC
1 AGTATTCAGTAAAAAGAGTAAGAAAAG
* *
381 AGTATTCAGTGAAAAGAATAAGAAAAG
1 AGTATTCAGTAAAAAGAGTAAGAAAAG
*
408 AGTCATT-AGTAAAAAGAGTAGGAAATA-
1 AGT-ATTCAGTAAAAAGAGTAAGAAA-AG
435 A-TATTCAGTAAAAAGAGTAAGAAAAG
1 AGTATTCAGTAAAAAGAGTAAGAAAAG
461 CGCGATAGTA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
25 4 0.06
26 37 0.55
27 22 0.33
28 4 0.06
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.19
Consensus pattern (27 bp):
AGTATTCAGTAAAAAGAGTAAGAAAAG
Found at i:541 original size:22 final size:22
Alignment explanation
Indices: 516--574 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
506 AGTGGTGATT
*
516 AGTAAAAATTGAAAA-GGCAATC
1 AGTAAAAAGT-AAAATGGCAATC
* *
538 AGTAAAGAGTAAAATGGTAATC
1 AGTAAAAAGTAAAATGGCAATC
*
560 AGTAAACAGTAAAAT
1 AGTAAAAAGTAAAAT
575 AATAAAGAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 4 0.12
22 28 0.88
ACGTcount: A:0.54, C:0.07, G:0.19, T:0.20
Consensus pattern (22 bp):
AGTAAAAAGTAAAATGGCAATC
Found at i:569 original size:29 final size:29
Alignment explanation
Indices: 537--613 Score: 72
Period size: 29 Copynumber: 2.7 Consensus size: 29
527 AAAAGGCAAT
**
537 CAGTAAAGAGTAAAATGGTAATCAGTAAA
1 CAGTAAAGAGTAAAATGGTAAAAAGTAAA
* *
566 CAGTAAA-A-TAATAAAGAGTAAAAAGTAAT
1 CAGTAAAGAGTAA-AATG-GTAAAAAGTAAA
595 CAGTAAAGAG--AAATGGTAA
1 CAGTAAAGAGTAAAATGGTAA
614 GGAGTAATAG
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
27 7 0.18
28 7 0.18
29 24 0.62
30 1 0.03
ACGTcount: A:0.56, C:0.05, G:0.19, T:0.19
Consensus pattern (29 bp):
CAGTAAAGAGTAAAATGGTAAAAAGTAAA
Found at i:644 original size:35 final size:34
Alignment explanation
Indices: 539--698 Score: 171
Period size: 35 Copynumber: 4.6 Consensus size: 34
529 AAGGCAATCA
* *
539 GTAAAGAGTAAA-ATGGTAATCAGTAAACAGTAAAATA
1 GTAAAGAGTAAAGA--GTAATCAGT-AA-AGAAAAATG
* * *
576 ATAAAGAGTAAAAAGTAATCAGTAAAGAGAAATG
1 GTAAAGAGTAAAGAGTAATCAGTAAAGAAAAATG
*
610 GTAAGGAGTAATAGAGTAATCAGTGAAA-AAAAATG
1 GTAAAGAGTAA-AGAGTAATCAGT-AAAGAAAAATG
645 GTAAAGAGTAAAGAGTAATCAGTAAAGGAAAAATG
1 GTAAAGAGTAAAGAGTAATCAGTAAA-GAAAAATG
* *
680 GTAAAGAATGAAGAGTAAT
1 GTAAAGAGTAAAGAGTAAT
699 TAGCAAAAGG
Statistics
Matches: 107, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
33 3 0.03
34 27 0.25
35 53 0.50
36 12 0.11
37 11 0.10
38 1 0.01
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.19
Consensus pattern (34 bp):
GTAAAGAGTAAAGAGTAATCAGTAAAGAAAAATG
Found at i:772 original size:21 final size:20
Alignment explanation
Indices: 744--998 Score: 98
Period size: 22 Copynumber: 12.2 Consensus size: 20
734 AGATTAGTAA
**
744 AAAG-AAAATGGTAAAGAGT
1 AAAGAAAAATGGTAATCAGT
763 AAAGTAAAAA--GTAATCAGT
1 AAAG-AAAAATGGTAATCAGT
782 AAAGAAAATATGGTAATCAGT
1 AAAGAAAA-ATGGTAATCAGT
** * *
803 AAAGAGTAATAGTGATCAGT
1 AAAGAAAAATGGTAATCAGT
* *
823 -AAGAAGTAATGGCAATCAGT
1 AAAGAA-AAATGGTAATCAGT
* * *
843 AAA-AAGTACAAAGGTAATTAAT
1 AAAGAA--A-AATGGTAATCAGT
865 AAA-AAGTAACATGGTAATCAGT
1 AAAGAA--AA-ATGGTAATCAGT
887 AAA-AAGTAAA-GGTAATCAGT
1 AAAGAA--AAATGGTAATCAGT
* * *
907 GAAAAGTAAAATGGTAATTAGA
1 --AAAGAAAAATGGTAATCAGT
* *
929 AAAGAGTAAAAGGGTAATCAAT
1 AAAGA--AAAATGGTAATCAGT
* *
951 AAAAAGTAAAATGGTAATTAGT
1 --AAAGAAAAATGGTAATCAGT
973 AAA-AAGTAAA-GAGTAATCAGT
1 AAAGAA--AAATG-GTAATCAGT
994 AAAGA
1 AAAGA
999 GTAAAGAGTA
Statistics
Matches: 181, Mismatches: 33, Indels: 41
0.71 0.13 0.16
Matches are distributed among these distances:
18 4 0.02
19 21 0.12
20 41 0.23
21 40 0.22
22 70 0.39
23 1 0.01
24 4 0.02
ACGTcount: A:0.54, C:0.04, G:0.20, T:0.21
Consensus pattern (20 bp):
AAAGAAAAATGGTAATCAGT
Found at i:868 original size:22 final size:22
Alignment explanation
Indices: 830--1003 Score: 153
Period size: 22 Copynumber: 8.0 Consensus size: 22
820 AGTAAGAAGT
* *
830 AATGGCAATCAGTAAAAAGTACA
1 AATGGTAATCAATAAAAAGTA-A
*
853 AA-GGTAATTAATAAAAAGTAA
1 AATGGTAATCAATAAAAAGTAA
* *
874 CATGGTAATCAGTAAAAAGT-A
1 AATGGTAATCAATAAAAAGTAA
* *
895 AA-GGTAATCAGTGAAAAGTAA
1 AATGGTAATCAATAAAAAGTAA
* *
916 AATGGTAATTAGA-AAAGAGTAA
1 AATGGTAATCA-ATAAAAAGTAA
*
938 AAGGGTAATCAATAAAAAGTAA
1 AATGGTAATCAATAAAAAGTAA
* *
960 AATGGTAATTAGTAAAAAGT-A
1 AATGGTAATCAATAAAAAGTAA
* *
981 AA-GAGTAATCAGTAAAGAGTAA
1 AATG-GTAATCAATAAAAAGTAA
1003 A
1 A
1004 GAGTAAAAAG
Statistics
Matches: 124, Mismatches: 20, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
20 17 0.14
21 25 0.20
22 80 0.65
23 2 0.02
ACGTcount: A:0.55, C:0.05, G:0.20, T:0.21
Consensus pattern (22 bp):
AATGGTAATCAATAAAAAGTAA
Found at i:886 original size:44 final size:43
Alignment explanation
Indices: 741--1003 Score: 233
Period size: 42 Copynumber: 6.3 Consensus size: 43
731 GAGAGATTAG
** * *
741 TAAAAAG-AAAATGGTAAAGAGT--AAAGTAAAAAGTAATCAG
1 TAAAAAGTAAAATGGTAATCAGTAAAAAGTAAAAGGTAATCAA
* * * * *
781 TAAAGAA--AATATGGTAATCAGTAAAGAGTAATA-GTGATCAG
1 TAAA-AAGTAAAATGGTAATCAGTAAAAAGTAAAAGGTAATCAA
* * *
822 TAAGAAGT--AATGGCAATCAGTAAAAAGTACAAAGGTAATTAA
1 TAAAAAGTAAAATGGTAATCAGTAAAAAGTA-AAAGGTAATCAA
* *
864 TAAAAAGTAACATGGTAATCAGTAAAAAGT-AAAGGTAATCAG
1 TAAAAAGTAAAATGGTAATCAGTAAAAAGTAAAAGGTAATCAA
* *
906 TGAAAAGTAAAATGGTAATTAG-AAAAGAGTAAAAGGGTAATCAA
1 TAAAAAGTAAAATGGTAATCAGTAAAA-AGTAAAA-GGTAATCAA
* *
950 TAAAAAGTAAAATGGTAATTAGTAAAAAGT-AAAGAGTAATCAG
1 TAAAAAGTAAAATGGTAATCAGTAAAAAGTAAAAG-GTAATCAA
*
993 TAAAGAGTAAA
1 TAAAAAGTAAA
1004 GAGTAAAAAG
Statistics
Matches: 183, Mismatches: 26, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
40 36 0.20
41 18 0.10
42 52 0.28
43 23 0.13
44 50 0.27
45 4 0.02
ACGTcount: A:0.54, C:0.04, G:0.20, T:0.21
Consensus pattern (43 bp):
TAAAAAGTAAAATGGTAATCAGTAAAAAGTAAAAGGTAATCAA
Found at i:894 original size:64 final size:64
Alignment explanation
Indices: 817--982 Score: 201
Period size: 64 Copynumber: 2.6 Consensus size: 64
807 AGTAATAGTG
* * * *
817 ATCAGTAAGAAGTAATGGCAATCAGTAAAAAGTACAAA-GGTAATTA-ATAAAAAGTAACATGGT
1 ATCAGTAAAAAGTAATGGTAATCAGTAAAAAGTA-AAATGGTAATTAGA-AAAAAGTAAAAGGGT
880 A
64 A
* * *
881 ATCAGTAAAAAGTAAAGGTAATCAGTGAAAAGTAAAATGGTAATTAGAAAAGAGTAAAAGGGTA
1 ATCAGTAAAAAGTAATGGTAATCAGTAAAAAGTAAAATGGTAATTAGAAAAAAGTAAAAGGGTA
* *
945 ATCAATAAAAAGTAAAATGGTAATTAGTAAAAAGTAAA
1 ATCAGTAAAAAGT--AATGGTAATCAGTAAAAAGTAAA
983 GAGTAATCAG
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
63 3 0.03
64 63 0.72
65 1 0.01
66 20 0.23
ACGTcount: A:0.54, C:0.05, G:0.19, T:0.22
Consensus pattern (64 bp):
ATCAGTAAAAAGTAATGGTAATCAGTAAAAAGTAAAATGGTAATTAGAAAAAAGTAAAAGGGTA
Found at i:974 original size:86 final size:85
Alignment explanation
Indices: 782--1003 Score: 265
Period size: 86 Copynumber: 2.6 Consensus size: 85
772 AGTAATCAGT
* * *
782 AAAGAAAATATGGTAATCAGTAAAGAGTAATA-GTGATCAGTAAGAAGT--AATGGCAATCAGTA
1 AAAGTAAA-ATGGTAATCAGTAAAAAGTAA-AGGTAATCAGTAA-AAGTAAAATGGCAATCAGTA
*
844 AAAAGTACAAAGGTAATTAATAA
63 AAAAGTACAAAGGTAATCAATAA
* * *
867 AAAGTAACATGGTAATCAGTAAAAAGTAAAGGTAATCAGTGAAAAGTAAAATGGTAATTAG-AAA
1 AAAGTAAAATGGTAATCAGTAAAAAGTAAAGGTAATCAGT-AAAAGTAAAATGGCAATCAGTAAA
931 AGAGTA-AAAGGGTAATCAATAA
65 A-AGTACAAA-GGTAATCAATAA
*
953 AAAGTAAAATGGTAATTAGTAAAAAGTAAAGAGTAATCAGTAAAGAGTAAA
1 AAAGTAAAATGGTAATCAGTAAAAAGTAAAG-GTAATCAGTAAA-AGTAAA
1004 GAGTAAAAAG
Statistics
Matches: 120, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
83 1 0.01
84 32 0.27
85 15 0.12
86 57 0.47
87 15 0.12
ACGTcount: A:0.54, C:0.05, G:0.20, T:0.22
Consensus pattern (85 bp):
AAAGTAAAATGGTAATCAGTAAAAAGTAAAGGTAATCAGTAAAAGTAAAATGGCAATCAGTAAAA
AGTACAAAGGTAATCAATAA
Found at i:980 original size:7 final size:7
Alignment explanation
Indices: 950--1016 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
940 GGGTAATCAA
950 TAAAAAG
1 TAAAAAG
*
957 TAAAATGG
1 TAAAA-AG
**
965 TAATTAG
1 TAAAAAG
972 TAAAAAG
1 TAAAAAG
*
979 TAAAGAG
1 TAAAAAG
**
986 TAATCAG
1 TAAAAAG
*
993 TAAAGAG
1 TAAAAAG
*
1000 TAAAGAG
1 TAAAAAG
1007 TAAAAAG
1 TAAAAAG
1014 TAA
1 TAA
1017 TCAGTAAAGA
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 43 0.91
8 4 0.09
ACGTcount: A:0.58, C:0.01, G:0.19, T:0.21
Consensus pattern (7 bp):
TAAAAAG
Found at i:987 original size:14 final size:14
Alignment explanation
Indices: 970--1026 Score: 69
Period size: 14 Copynumber: 4.1 Consensus size: 14
960 AATGGTAATT
*
970 AGTAAAAAGTAAAG
1 AGTAAACAGTAAAG
*
984 AGTAATCAGTAAAG
1 AGTAAACAGTAAAG
* *
998 AGTAAAGAGTAAAA
1 AGTAAACAGTAAAG
*
1012 AGTAATCAGTAAAG
1 AGTAAACAGTAAAG
1026 A
1 A
1027 AAAGAATAGT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.58, C:0.04, G:0.21, T:0.18
Consensus pattern (14 bp):
AGTAAACAGTAAAG
Found at i:1023 original size:86 final size:84
Alignment explanation
Indices: 765--1024 Score: 221
Period size: 86 Copynumber: 3.1 Consensus size: 84
755 TAAAGAGTAA
* * * * *
765 AGTAAAAAGTAATCAGTAAAGAA--AATATGGTAATCAGTAAAGAGTAATA-GTGATCAGT-AAG
1 AGTAAAAGGTAATCAATAAA-AAGTAAAATGGTAATCAGTAAAAAGTAA-AGGTAATCAGTGAA-
* * **
826 AAGT-AATGGCAATCAGTAAAA-
63 AAGTAAAAGGTAAAAAG-AAAAC
* *
847 AGTACAAAGGTAATTAATAAAAAGTAACATGGTAATCAGTAAAAAGTAAAGGTAATCAGTGAAAA
1 AGTA-AAAGGTAATCAATAAAAAGTAAAATGGTAATCAGTAAAAAGTAAAGGTAATCAGTGAAAA
** *
912 GTAAAATGGTAATTAGAAAAG
65 GTAAAA-GGTAAAAAGAAAAC
*
933 AGTAAAAGGGTAATCAATAAAAAGTAAAATGGTAATTAGTAAAAAGTAAAGAGTAATCAGT-AAA
1 AGTAAAA-GGTAATCAATAAAAAGTAAAATGGTAATCAGTAAAAAGTAAAG-GTAATCAGTGAAA
* *
997 GAGT-AAAGAGTAAAAAGTAATC
64 -AGTAAAAG-GTAAAAAGAAAAC
1019 AGTAAA
1 AGTAAA
1025 GAAAAGAATA
Statistics
Matches: 149, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
82 6 0.04
83 14 0.09
84 34 0.23
85 12 0.08
86 71 0.48
87 12 0.08
ACGTcount: A:0.54, C:0.05, G:0.20, T:0.22
Consensus pattern (84 bp):
AGTAAAAGGTAATCAATAAAAAGTAAAATGGTAATCAGTAAAAAGTAAAGGTAATCAGTGAAAAG
TAAAAGGTAAAAAGAAAAC
Found at i:1062 original size:19 final size:18
Alignment explanation
Indices: 1009--1063 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 18
999 GTAAAGAGTA
1009 AAAAGTAATCAGT-AAA-G
1 AAAAG-AATCAGTAAAATG
1026 AAAAGAAT-AGTAAGAAATG
1 AAAAGAATCAGT-A-AAATG
1045 AAAAGAAATCAGTAAAATG
1 AAAAG-AATCAGTAAAATG
1064 GTAAAGGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 3 0.09
16 3 0.09
17 5 0.16
18 3 0.09
19 11 0.34
20 4 0.12
21 3 0.09
ACGTcount: A:0.62, C:0.04, G:0.18, T:0.16
Consensus pattern (18 bp):
AAAAGAATCAGTAAAATG
Found at i:1123 original size:42 final size:42
Alignment explanation
Indices: 1084--1208 Score: 144
Period size: 42 Copynumber: 3.0 Consensus size: 42
1074 AAGAGTAATC
* * *
1084 AGTAAAGGAAAAT-GGTAGAGAGTAAAATATTAATCAGTAAAA
1 AGTAAAGG-AAATCAGTAAAGAATAAAATATTAATCAGTAAAA
* *
1126 AGTAAAGGCAATCAGTAAAGAATAAAATATTAATCAGTAAAG
1 AGTAAAGGAAATCAGTAAAGAATAAAATATTAATCAGTAAAA
* * * *
1168 AGTAGAGAGTAATCAGTAAAGAGTAAAATAGTAATCAGTAA
1 AGTAAAG-GAAATCAGTAAAGAATAAAATATTAATCAGTAA
1209 GTGGTGATTA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
41 3 0.04
42 39 0.54
43 30 0.42
ACGTcount: A:0.54, C:0.05, G:0.20, T:0.22
Consensus pattern (42 bp):
AGTAAAGGAAATCAGTAAAGAATAAAATATTAATCAGTAAAA
Found at i:1163 original size:22 final size:22
Alignment explanation
Indices: 1106--1208 Score: 97
Period size: 22 Copynumber: 4.8 Consensus size: 22
1096 TGGTAGAGAG
*
1106 TAAAATATTAATCAGTAAA-AA
1 TAAAATAGTAATCAGTAAAGAA
* *
1127 GT-AAA-GGCAATCAGTAAAGAA
1 -TAAAATAGTAATCAGTAAAGAA
* *
1148 TAAAATATTAATCAGTAAAGAG
1 TAAAATAGTAATCAGTAAAGAA
* * *
1170 T-AGAGAGTAATCAGTAAAGAG
1 TAAAATAGTAATCAGTAAAGAA
1191 TAAAATAGTAATCAGTAA
1 TAAAATAGTAATCAGTAA
1209 GTGGTGATTA
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
20 11 0.17
21 26 0.40
22 28 0.43
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (22 bp):
TAAAATAGTAATCAGTAAAGAA
Found at i:1196 original size:43 final size:42
Alignment explanation
Indices: 1102--1208 Score: 160
Period size: 43 Copynumber: 2.5 Consensus size: 42
1092 AAAATGGTAG
1102 AGAGTAAAATATTAATCAGTAAAAAGTAAAGGCAATCAGTAA
1 AGAGTAAAATATTAATCAGTAAAAAGTAAAGGCAATCAGTAA
* * * *
1144 AGAATAAAATATTAATCAGTAAAGAGTAGAGAGTAATCAGTAA
1 AGAGTAAAATATTAATCAGTAAAAAGTAAAG-GCAATCAGTAA
*
1187 AGAGTAAAATAGTAATCAGTAA
1 AGAGTAAAATATTAATCAGTAA
1209 GTGGTGATTA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 28 0.48
43 30 0.52
ACGTcount: A:0.54, C:0.06, G:0.18, T:0.22
Consensus pattern (42 bp):
AGAGTAAAATATTAATCAGTAAAAAGTAAAGGCAATCAGTAA
Found at i:1396 original size:24 final size:25
Alignment explanation
Indices: 1365--1411 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
1355 AGAGTAAGAA
1365 AAAAGTAAAAATGATAA-AAGTAGC
1 AAAAGTAAAAATGATAATAAGTAGC
* *
1389 AAAAGTAAGAATGGTAATAAGTA
1 AAAAGTAAAAATGATAATAAGTA
1412 AGAAGAGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.60, C:0.02, G:0.19, T:0.19
Consensus pattern (25 bp):
AAAAGTAAAAATGATAATAAGTAGC
Found at i:2242 original size:15 final size:15
Alignment explanation
Indices: 2219--2277 Score: 93
Period size: 15 Copynumber: 3.9 Consensus size: 15
2209 AAACTTACTT
2219 TCCTAGGAATCACTC
1 TCCTAGGAATCACTC
*
2234 TCCTGGGAATCACTC
1 TCCTAGGAATCACTC
2249 TCCTAGGAATCACTC
1 TCCTAGGAATCACTC
2264 TCCT-GGAAATCACT
1 TCCTAGG-AATCACT
2278 TTCCCATGGA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
14 2 0.05
15 39 0.95
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.27
Consensus pattern (15 bp):
TCCTAGGAATCACTC
Found at i:2255 original size:30 final size:30
Alignment explanation
Indices: 2219--2277 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
2209 AAACTTACTT
*
2219 TCCTAGGAATCACTCTCCTGGGAATCACTC
1 TCCTAGGAATCACTCTCCTGGAAATCACTC
2249 TCCTAGGAATCACTCTCCTGGAAATCACT
1 TCCTAGGAATCACTCTCCTGGAAATCACT
2278 TTCCCATGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.27
Consensus pattern (30 bp):
TCCTAGGAATCACTCTCCTGGAAATCACTC
Done.