Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001336.1 Corchorus capsularis cultivar CVL-1 contig01336, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1671
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:1307 original size:31 final size:31

Alignment explanation


    Indices: 1269--1335  Score: 98
    Period size: 31  Copynumber: 2.2  Consensus size: 31

       1259 ACGGTGTTCG

                    **                    *
       1269 ACGTGGCATGCCACGTGGATAAAAAAGTAAT
          1 ACGTGGCACACCACGTGGATAAAAAAGTAAC

                                *          
       1300 ACGTGGCACACCACGTGGATCAAAAAGTAAC
          1 ACGTGGCACACCACGTGGATAAAAAAGTAAC

                 
       1331 ACGTG
          1 ACGTG

       1336 ACACGTCACG


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.37, C:0.21, G:0.25, T:0.16


Consensus pattern (31 bp):   
ACGTGGCACACCACGTGGATAAAAAAGTAAC

Found at i:1409 original size:31 final size:31

Alignment explanation


    Indices: 1374--1459  Score: 154
    Period size: 31  Copynumber: 2.8  Consensus size: 31

       1364 GTCATGCATC

                  *  *                     
       1374 AAAAAGTGATACGTGGCATGCCACATGTACT
          1 AAAAAGCGACACGTGGCATGCCACATGTACT

                                           
       1405 AAAAAGCGACACGTGGCATGCCACATGTACT
          1 AAAAAGCGACACGTGGCATGCCACATGTACT

                                    
       1436 AAAAAGCGACACGTGGCATGCCAC
          1 AAAAAGCGACACGTGGCATGCCAC

       1460 GCGCACAAAA


Statistics
Matches: 53,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  31   53  1.00

ACGTcount: A:0.36, C:0.24, G:0.23, T:0.16


Consensus pattern (31 bp):   
AAAAAGCGACACGTGGCATGCCACATGTACT
Done.