genome.fa.s13360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013360.1 Corchorus capsularis cultivar CVL-1 contig13381, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123928

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532--569	11	3.5	11	85	10	51	57	2	0	39	1.12
11927--12068	71	2.0	71	95	0	257	30	28	20	20	1.97
13118--13264	38	3.9	38	84	4	181	24	18	32	24	1.97
15656--15708	26	2.1	26	82	10	65	3	22	0	73	0.99
16227--16277	24	2.1	24	82	10	59	3	17	1	76	1.03
16228--16284	25	2.3	23	80	16	62	3	19	1	75	1.04
16267--16300	17	2.1	15	89	10	50	8	26	0	64	1.22
17359--17429	36	2.0	36	88	5	108	47	7	38	7	1.58
47311--47348	17	2.2	17	90	0	58	63	0	26	10	1.27
49292--49340	25	1.9	25	91	4	80	40	14	8	36	1.75
52578--52638	27	2.2	28	80	8	72	21	37	14	26	1.92
52598--52678	24	3.2	24	76	11	74	16	39	19	24	1.91
58387--58428	12	3.5	13	87	9	54	45	30	23	0	1.53
58396--58431	12	3.0	12	95	0	63	47	33	19	0	1.50
59496--59536	21	2.0	20	85	4	55	48	17	9	24	1.76
70761--70785	5	5.0	5	100	0	50	60	0	20	20	1.37
72534--72566	2	16.5	2	100	0	66	51	0	0	48	1.00
77275--77414	47	3.0	46	91	6	230	26	10	23	39	1.87
77437--77475	19	2.1	19	100	0	78	25	10	25	38	1.87
77646--77742	49	2.0	50	97	2	187	34	9	16	40	1.80
85307--85357	26	2.0	26	84	7	68	66	9	5	17	1.40
90796--90859	3	20.3	3	78	9	58	32	4	3	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91114--91182	9	7.8	9	75	15	54	44	1	2	50	1.25
91312--91417	21	5.0	21	87	4	142	25	11	25	37	1.89
91478--91540	21	3.0	21	79	9	56	31	11	22	34	1.89
91353--91639	123	2.3	123	88	4	413	31	12	22	34	1.91
91599--91653	20	2.7	20	82	2	65	30	18	14	36	1.91
94804--94843	15	2.7	15	84	0	53	17	5	20	57	1.58
102037--102073	6	6.2	6	90	0	56	16	5	67	10	1.38
102037--102073	12	3.1	12	96	0	65	16	5	67	10	1.38
106852--107028	39	4.6	38	77	8	135	14	9	42	33	1.78
106891--107062	78	2.2	78	88	0	227	13	8	44	33	1.74
106814--107028	117	1.8	117	80	7	258	14	8	44	32	1.75
106931--107062	39	3.4	39	74	9	135	15	6	45	32	1.72
106951--107251	99	3.1	100	75	13	311	15	7	45	31	1.75
107048--107097	21	2.4	20	80	9	55	8	12	52	28	1.66
107204--107335	39	3.4	38	71	16	119	15	8	43	33	1.76
106973--107268	96	3.1	96	77	8	355	14	8	44	31	1.75
107242--107307	21	3.3	21	71	16	59	12	9	43	34	1.73
107168--107348	78	2.3	79	90	1	276	15	8	43	32	1.77
107231--107349	39	3.1	37	72	13	132	15	7	42	35	1.75
107243--107445	99	2.1	99	90	1	318	13	9	43	32	1.77
106874--107595	273	2.6	273	87	5	962	14	9	43	31	1.79
107356--107742	39	9.9	39	69	9	198	15	10	43	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107356--107796	117	3.8	117	94	0	738	15	9	43	30	1.80
107462--107788	78	4.2	78	70	13	217	16	10	44	29	1.80
107774--107817	21	2.1	21	87	8	63	11	6	52	29	1.63
107696--107897	99	2.0	99	90	0	314	14	7	46	31	1.74
107830--107910	39	2.1	39	83	4	101	18	3	44	33	1.67
116307--116357	21	2.4	21	76	3	57	31	39	13	15	1.87
123184--123222	20	1.9	20	89	5	60	58	7	2	30	1.39

Tables:   1

The End!