Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013362.1 Corchorus capsularis cultivar CVL-1 contig13383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16591

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2288--2318
16
1.9
16
100
0
62
58
3
0
38
1.15
3426--3485
16
3.6
17
82
10
63
70
18
10
1
1.24
3759--3812
28
2.0
29
82
13
71
12
11
20
55
1.67
5136--5176
21
2.0
21
85
0
55
36
4
36
21
1.75
6701--6735
2
18.0
2
94
5
63
48
0
0
51
1.00
8999--9026
2
14.0
2
100
0
56
50
0
0
50
1.00
9321--9408
45
2.0
45
100
0
176
40
15
6
36
1.74
10110--10174
2
36.5
2
74
22
65
50
0
0
49
1.00
10107--10146
7
5.4
7
91
8
62
42
0
0
57
0.98
10110--10174
9
7.6
9
75
13
57
50
0
0
49
1.00
10107--10173
23
2.9
22
82
10
71
50
0
0
49
1.00
10110--10173
7
9.6
7
82
16
55
51
0
0
48
1.00
10338--10388
23
2.2
23
86
6
68
37
3
9
49
1.55
11029--12662
335
4.9
331
79
6
1821
35
16
14
33
1.89
11029--12662
667
2.4
666
89
3
2476
35
16
14
33
1.89
12516--12802
149
1.9
149
86
1
405
39
14
16
29
1.89
12665--13342
330
2.0
332
82
4
814
35
16
14
32
1.90
13398--13464
27
2.4
28
82
9
84
50
0
5
43
1.26
13387--13565
94
1.9
95
87
5
265
55
3
6
34
1.45
13792--13887
38
2.6
37
80
6
122
55
10
19
14
1.68
13935--13985
15
3.6
15
69
15
54
54
0
11
33
1.37
14011--14105
31
3.1
31
90
3
149
48
5
17
28
1.69

Tables:   1

The End!