Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013367.1 Corchorus capsularis cultivar CVL-1 contig13388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12150

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
141--203
19
3.2
19
80
12
74
42
23
4
28
1.74
940--972
2
16.5
2
93
0
57
48
0
3
48
1.17
1189--1232
2
23.0
2
86
9
65
47
0
2
50
1.13
1192--1239
13
3.6
13
81
13
62
50
0
2
47
1.12
1190--1239
15
3.3
15
85
2
73
50
0
2
48
1.12
4150--4184
15
2.2
16
90
5
54
48
37
5
8
1.58
5119--5154
2
18.0
2
100
0
72
50
0
0
50
1.00
5896--5925
11
2.8
11
95
5
53
63
0
0
36
0.95
7867--7894
2
14.0
2
100
0
56
50
0
0
50
1.00
10296--10349
26
2.0
27
96
3
101
20
11
3
64
1.40
12099--12131
9
3.7
9
92
8
50
0
9
0
90
0.44

Tables:   1

The End!