Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013368.1 Corchorus capsularis cultivar CVL-1 contig13389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52397

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
633--662
2
15.0
2
100
0
60
50
0
0
50
1.00
1872--1941
32
2.4
27
77
22
72
60
7
8
24
1.51
3885--3924
20
2.0
20
100
0
80
45
25
5
25
1.73
9517--9542
2
13.0
2
100
0
52
0
0
50
50
1.00
22536--22568
7
4.7
7
96
0
57
36
30
15
18
1.91
32482--32537
27
2.1
27
100
0
112
50
25
10
14
1.75
43316--43364
25
2.0
25
87
0
71
22
14
32
30
1.93
45781--45816
18
2.0
18
100
0
72
27
16
11
44
1.82
50033--50064
14
2.3
14
94
0
55
46
6
6
40
1.54
50054--50092
8
5.0
8
84
3
53
61
0
0
38
0.96
50415--50473
31
1.9
31
89
6
93
30
11
3
54
1.53
50786--50823
19
2.0
20
85
15
53
28
5
2
63
1.30
50989--51121
22
5.9
22
78
10
101
33
10
18
38
1.85
50987--51097
22
5.0
22
78
9
109
32
10
18
38
1.85
51151--51279
56
2.3
56
80
7
129
37
8
17
36
1.81
51229--51294
22
3.0
22
80
6
73
36
6
19
37
1.77
51319--51419
21
4.5
22
73
16
64
42
8
13
34
1.76
51332--51373
22
2.0
22
85
4
59
38
9
16
35
1.81
51382--51529
22
6.6
22
72
9
86
41
10
12
35
1.77
51648--52120
22
21.7
22
67
15
160
38
10
15
35
1.82
51643--52120
44
11.0
44
69
12
236
38
10
15
35
1.83
51711--51813
45
2.3
44
80
5
118
42
8
16
32
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52152--52205
22
2.5
22
84
0
63
40
11
11
37
1.76
52324--52395
2
34.5
2
83
8
90
48
1
6
43
1.38

Tables:   1

The End!