Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013370.1 Corchorus capsularis cultivar CVL-1 contig13391, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87753

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2195--2226
3
10.7
3
100
0
64
65
0
0
34
0.93
4331--4403
28
2.7
27
77
12
78
39
4
2
53
1.34
4391--4425
3
11.7
3
100
0
70
31
0
0
68
0.90
4607--4666
29
2.1
29
93
0
102
45
21
3
30
1.68
4670--4700
13
2.4
13
100
0
62
54
0
0
45
0.99
4871--4968
51
1.9
51
95
0
178
30
19
16
33
1.94
5218--5291
37
2.0
37
97
0
139
27
27
1
44
1.62
12322--12353
15
2.1
15
94
0
55
75
0
15
9
1.05
14690--14726
2
20.0
2
84
15
53
48
0
0
51
1.00
14687--14730
12
3.4
12
85
14
61
50
0
0
50
1.00
14692--14730
10
4.2
9
87
12
53
48
0
0
51
1.00
14898--14980
42
2.0
43
88
7
125
34
24
18
22
1.96
27301--27361
17
3.5
17
76
12
61
0
22
0
77
0.78
36442--36474
2
16.5
2
100
0
66
0
0
48
51
1.00
37572--37729
78
2.0
78
100
0
316
27
12
25
34
1.92
38078--38425
181
1.9
181
95
1
635
24
15
20
39
1.91
38830--38894
27
2.4
27
94
0
112
15
26
12
46
1.81
40363--40389
2
13.5
2
100
0
54
51
0
0
48
1.00
42169--42207
2
19.0
2
94
5
69
48
2
0
48
1.15
50048--50074
2
13.5
2
100
0
54
51
0
0
48
1.00
56728--56782
28
2.0
28
89
7
85
23
14
5
56
1.59
59627--59666
3
13.7
3
94
5
73
0
30
0
70
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59622--59679
9
6.3
9
84
9
55
0
24
0
75
0.80
70469--70530
20
3.0
20
73
17
65
51
8
9
30
1.63
87180--87361
22
8.3
21
74
13
145
36
12
18
31
1.89
87191--87361
89
1.9
88
91
1
279
38
12
16
32
1.87
87190--87361
44
3.9
44
92
2
274
37
12
17
31
1.88

Tables:   1

The End!