Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013373.1 Corchorus capsularis cultivar CVL-1 contig13394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54836

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--99
43
2.2
45
88
3
140
53
11
6
28
1.61
469--503
6
5.8
6
96
0
61
20
51
11
17
1.75
5049--5092
3
15.0
3
95
4
81
65
0
0
34
0.93
5910--5989
29
2.7
29
86
7
99
37
12
23
26
1.90
6991--8228
319
3.9
317
81
6
1420
34
16
14
34
1.90
6999--8228
324
3.8
319
81
5
1412
34
16
14
33
1.90
8703--8742
2
21.5
2
85
14
59
52
0
0
47
1.00
9691--10561
330
2.6
325
78
10
869
37
13
14
33
1.86
11031--11061
6
5.0
6
92
7
53
64
0
0
35
0.94
11167--11196
15
1.9
16
93
6
53
53
3
0
43
1.17
11459--11491
2
17.5
2
87
12
52
51
0
0
48
1.00
11458--11494
10
3.4
11
88
11
58
54
0
0
45
1.00
11458--11495
12
3.2
13
85
14
55
55
0
0
44
0.99
11996--12037
6
7.0
6
97
0
57
26
50
7
16
1.71
11996--12036
12
3.4
12
93
0
64
24
51
7
17
1.70
28716--28748
17
1.9
17
100
0
66
36
9
12
42
1.74
46155--46183
10
3.0
10
95
5
51
93
0
0
6
0.36
48680--48708
7
4.1
7
100
0
58
31
13
13
41
1.84
51679--51706
2
14.0
2
100
0
56
0
0
50
50
1.00

Tables:   1

The End!