Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013376.1 Corchorus capsularis cultivar CVL-1 contig13397, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94299

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
181--232
21
2.6
20
93
6
88
30
7
44
17
1.77
199--244
21
2.2
21
84
0
56
39
10
34
15
1.82
617--697
29
2.8
28
85
5
117
48
7
13
30
1.70
1683--1746
24
2.7
25
85
4
80
29
7
48
14
1.71
3089--3159
28
2.5
28
90
0
106
18
28
21
32
1.96
4152--4190
17
2.5
15
84
15
60
30
12
46
10
1.75
4158--4191
17
2.0
17
100
0
68
29
11
47
11
1.76
5804--5890
43
2.0
44
91
6
142
33
18
5
42
1.74
6304--6399
31
3.0
31
80
5
120
18
38
28
14
1.90
6958--7018
30
2.0
30
96
0
113
16
8
40
34
1.78
9426--9482
29
2.0
29
85
0
78
45
14
17
22
1.84
12820--12847
2
14.0
2
100
0
56
50
0
0
50
1.00
18068--18256
98
2.0
95
93
3
324
35
9
19
35
1.84
37660--37697
11
3.5
11
89
10
51
39
0
2
57
1.12
52297--52347
25
2.0
25
85
11
68
52
1
7
37
1.42
58937--59026
45
2.0
45
89
4
137
23
25
20
31
1.98
65988--66021
17
2.0
17
100
0
68
41
17
11
29
1.85
70307--70339
2
16.5
2
93
0
57
51
0
48
0
1.00
79013--79191
79
2.3
79
94
0
304
36
13
16
32
1.89
83937--83966
2
15.0
2
100
0
60
50
0
0
50
1.00
86773--86797
13
1.9
13
100
0
50
32
8
20
40
1.81
87191--87236
22
2.1
22
87
0
65
45
10
21
21
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89981--90023
15
2.9
15
96
3
79
32
6
18
41
1.77

Tables:   1

The End!