Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013378.1 Corchorus capsularis cultivar CVL-1 contig13399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147859

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1708--1732
2
12.5
2
100
0
50
52
0
0
48
1.00
1733--1834
52
2.0
52
96
0
186
44
8
10
36
1.71
2176--2204
2
14.5
2
100
0
58
51
0
0
48
1.00
7379--8277
453
2.0
449
96
0
1645
33
23
14
28
1.94
13086--13110
12
2.1
12
100
0
50
84
16
0
0
0.63
24161--24185
12
2.1
12
100
0
50
16
16
28
40
1.89
42680--42705
1
26.0
1
100
0
52
100
0
0
0
0.00
44526--44919
197
2.0
197
100
0
788
32
15
17
34
1.91
45498--45871
155
2.4
154
80
9
422
30
14
21
33
1.93
46196--46237
17
2.5
17
96
0
75
21
35
14
28
1.92
46938--46972
2
17.5
2
88
11
54
48
2
0
48
1.16
57117--57159
20
2.1
21
95
4
79
23
18
23
34
1.96
57935--57969
6
5.8
6
100
0
70
65
17
0
17
1.27
60054--60083
2
15.0
2
100
0
60
50
0
0
50
1.00
61247--61276
2
14.5
2
93
6
51
50
3
0
46
1.18
61598--61631
15
2.3
15
94
0
59
55
5
8
29
1.54
67720--67744
13
1.9
13
100
0
50
48
16
0
36
1.46
67836--67863
2
14.0
2
100
0
56
50
0
0
50
1.00
69252--69286
1
35.0
1
100
0
70
100
0
0
0
0.00
71833--72023
63
3.0
63
84
0
229
32
15
34
17
1.91
96396--96425
2
15.5
2
93
6
53
46
0
0
53
1.00
104045--104089
15
3.0
15
86
0
63
53
0
42
4
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115129--115168
6
6.7
6
86
8
55
17
0
0
82
0.67
115128--115168
19
2.3
18
84
12
57
17
0
0
82
0.66
128981--129068
31
2.8
31
70
13
81
36
26
19
18
1.94
132335--132391
25
2.4
22
85
11
69
66
5
14
14
1.41
140558--140643
41
2.2
39
91
4
136
20
20
11
46
1.82
140983--141056
3
24.7
3
81
15
91
32
2
1
63
1.17
141191--141235
22
2.0
22
91
0
72
28
6
28
35
1.83
142333--142422
45
2.0
45
93
0
153
32
20
23
24
1.98
143742--143781
21
1.9
21
84
0
53
50
5
0
45
1.23
144590--144619
2
15.0
2
92
0
51
3
0
50
46
1.18
147435--147461
1
27.0
1
100
0
54
0
0
0
100
0.00

Tables:   1

The End!