Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013380.1 Corchorus capsularis cultivar CVL-1 contig13401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61818

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1718--3502
344
5.4
334
76
10
1420
34
13
14
37
1.86
3484--3512
2
14.5
2
100
0
58
48
0
0
51
1.00
9713--9800
42
2.1
41
81
10
99
18
20
15
45
1.85
10110--10154
15
3.2
15
69
18
51
17
46
13
22
1.83
10554--10656
54
1.9
54
95
0
188
27
13
26
33
1.94
10777--10886
55
2.0
55
94
0
193
36
8
24
30
1.85
12758--12833
38
2.0
38
100
0
152
23
21
23
31
1.98
12868--12922
17
3.2
17
85
10
76
38
20
21
20
1.94
13040--13088
20
2.5
20
100
0
98
40
26
18
14
1.89
16128--16176
13
3.7
13
78
10
55
18
12
20
48
1.79
19240--19306
3
23.0
3
82
11
86
34
2
0
62
1.10
21284--21309
5
5.2
5
100
0
52
0
19
0
80
0.71
25699--25787
18
4.9
18
84
0
124
20
30
23
25
1.98
30464--30827
114
3.2
114
89
3
545
31
22
23
23
1.99
45089--45127
20
2.0
20
85
10
53
58
5
2
33
1.33
56136--56160
3
8.3
3
100
0
50
36
0
32
32
1.58
60211--60435
70
3.1
69
82
12
279
49
0
12
36
1.45
60208--60443
78
3.1
76
88
8
333
50
0
12
36
1.46

Tables:   1

The End!