Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013381.1 Corchorus capsularis cultivar CVL-1 contig13402, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21802
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30


Found at i:10966 original size:15 final size:15

Alignment explanation


    Indices: 10923--10969  Score: 67
    Period size: 15  Copynumber: 3.1  Consensus size: 15

      10913 TACCTTCTTG

                *        **
      10923 TTTGTATCACCCTTG
          1 TTTGCATCACCCTCA

                           
      10938 TTTGCATCACCCTCA
          1 TTTGCATCACCCTCA

                           
      10953 TTTGCATCACCCTCA
          1 TTTGCATCACCCTCA

              
      10968 TT
          1 TT

      10970 GTCTTCATCT


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   29  1.00

ACGTcount: A:0.17, C:0.34, G:0.09, T:0.40


Consensus pattern (15 bp):   
TTTGCATCACCCTCA
Done.