Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013383.1 Corchorus capsularis cultivar CVL-1 contig13404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67971

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1091--1123
17
1.9
17
93
0
57
24
0
15
60
1.35
2250--2292
21
2.0
21
86
0
59
18
34
9
37
1.83
2510--2573
33
2.0
32
82
14
78
14
34
37
14
1.86
2658--2775
33
3.6
31
78
17
100
11
42
34
11
1.77
2839--2997
33
4.9
33
92
1
225
11
29
42
16
1.84
2839--2997
65
2.5
65
87
3
223
11
29
42
16
1.84
3781--3821
2
20.0
2
90
5
64
46
0
2
51
1.14
7696--7731
17
2.1
18
89
5
56
25
19
13
41
1.88
16185--16289
31
3.5
30
76
15
108
34
18
20
26
1.96
16189--16352
60
2.7
59
84
7
206
35
17
19
27
1.94
27961--27992
15
2.1
15
94
0
55
50
12
6
31
1.65
32305--32387
40
2.1
40
97
0
157
54
9
18
18
1.70
38153--38188
3
12.0
3
100
0
72
33
0
0
66
0.92
47170--47199
2
15.0
2
100
0
60
50
0
0
50
1.00
47516--47551
17
2.1
18
89
5
56
58
0
19
22
1.40
49520--49584
33
2.0
33
84
0
85
21
26
16
35
1.95
52681--52743
30
2.1
30
88
5
92
38
17
4
39
1.71
56110--56136
2
13.5
2
100
0
54
51
48
0
0
1.00
56058--56219
83
2.0
83
100
0
324
39
24
12
22
1.90
56193--56221
2
14.5
2
100
0
58
51
48
0
0
1.00
58443--58530
42
2.1
42
100
0
176
30
18
19
31
1.95
59062--59106
4
11.2
4
85
0
54
40
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59064--59112
12
4.1
12
89
0
62
36
0
0
63
0.95
58990--59184
98
2.0
99
95
1
356
32
9
11
46
1.72
59160--59191
2
16.0
2
100
0
64
50
0
0
50
1.00
60618--60666
8
6.1
8
92
0
53
51
34
0
14
1.43
60622--60666
12
3.8
12
87
0
54
51
33
0
15
1.44
64327--64404
29
2.7
29
82
9
95
20
24
12
42
1.87

Tables:   1

The End!