genome.fa.s13384.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013384.1 Corchorus capsularis cultivar CVL-1 contig13405, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45360

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--212	78	2.8	77	89	6	321	37	11	0	50	1.39
1770--1833	31	2.1	31	88	5	96	26	18	4	50	1.67
2155--2217	22	2.9	22	95	0	99	34	15	17	31	1.92
2110--2271	22	7.3	22	73	10	78	30	11	19	37	1.88
2391--2633	22	10.9	22	70	17	119	41	9	13	35	1.77
2525--2563	21	2.0	19	85	14	53	46	5	7	41	1.55
2506--2721	44	4.9	45	75	11	178	44	8	12	35	1.72
2485--2721	22	10.7	22	72	12	132	43	8	12	35	1.73
2556--2721	88	1.9	88	82	5	210	44	9	12	33	1.74
2803--2869	19	3.5	19	83	2	89	41	10	22	25	1.85
2860--3308	22	20.5	22	67	14	135	38	8	14	37	1.78
3053--3156	23	4.6	23	78	3	95	37	8	14	39	1.77
3206--3291	45	1.9	45	80	4	102	33	10	16	39	1.83
3750--3788	2	19.5	2	100	0	78	48	0	0	51	1.00
9438--9977	22	24.7	22	68	11	157	36	15	9	38	1.81
9571--9656	45	1.9	45	83	4	111	38	16	11	33	1.85
9945--9995	20	2.5	20	90	0	75	33	17	9	39	1.83
10080--10155	22	3.5	23	80	10	63	31	9	10	48	1.69
10165--10493	22	14.8	21	68	16	118	34	16	10	38	1.82
10105--10249	66	2.2	65	79	8	150	33	14	10	42	1.80
10077--10242	88	1.9	88	81	6	201	32	13	10	43	1.78
10529--10616	22	3.9	22	79	8	88	40	19	6	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10538--10739	46	4.5	44	74	11	149	40	15	10	34	1.81
10529--10740	68	3.1	66	75	11	196	40	16	9	33	1.82
10584--10693	22	4.8	23	79	10	118	38	13	13	34	1.84
10676--10736	22	2.8	22	72	5	61	37	13	11	37	1.80
10897--10934	19	2.0	19	90	10	60	68	0	2	28	1.03
10906--10946	19	2.2	19	86	8	57	70	0	2	26	0.99
17344--17380	1	37.0	1	94	0	56	0	5	0	94	0.30
19417--19446	1	30.0	1	100	0	60	100	0	0	0	0.00
20995--21229	78	3.0	78	98	0	443	26	18	20	34	1.96
32091--32264	85	2.0	86	95	4	316	51	4	6	37	1.48
32369--32402	12	2.7	13	86	9	52	79	20	0	0	0.73
32675--32765	30	3.1	30	82	4	105	16	19	27	36	1.93
35663--36026	156	2.3	155	78	10	359	35	19	14	30	1.92
39065--39119	21	2.7	21	80	8	60	21	20	18	40	1.92
42133--42416	120	2.4	121	85	3	376	22	24	24	28	2.00

Tables:   1

The End!