Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013385.1 Corchorus capsularis cultivar CVL-1 contig13406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36836

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
350--391
20
2.1
20
86
0
57
35
0
7
57
1.26
611--641
4
7.8
4
100
0
62
25
0
0
74
0.82
1521--1851
139
2.4
140
90
1
513
42
10
10
36
1.74
10231--10291
27
2.3
27
91
0
95
22
19
22
34
1.97
11066--11121
29
1.9
29
88
0
85
41
19
5
33
1.74
11902--12064
60
2.7
59
88
3
236
35
18
19
26
1.95
11963--12066
31
3.4
30
69
19
90
36
21
19
23
1.95
12093--12227
31
4.4
31
79
10
161
24
19
18
37
1.94
12156--12256
29
3.4
29
75
15
116
25
20
19
33
1.97
12127--12264
60
2.3
60
96
0
249
25
19
18
36
1.94
12127--12287
60
2.7
60
88
7
238
26
19
17
36
1.94
28131--28155
12
2.1
12
100
0
50
8
44
32
16
1.76

Tables:   1

The End!