Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013386.1 Corchorus capsularis cultivar CVL-1 contig13407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16008

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1654--2184
278
1.9
278
96
0
981
31
11
18
38
1.87
3126--3186
31
2.0
31
96
0
113
29
21
8
40
1.82
3943--4008
32
2.2
29
89
10
98
31
12
16
39
1.85
8279--8388
55
2.0
55
94
0
193
30
24
8
36
1.85
8509--8611
54
1.9
54
95
0
188
33
26
13
27
1.94
9591--9638
22
2.3
20
86
10
62
39
25
16
18
1.91
9558--9660
53
1.9
53
86
0
143
34
26
20
18
1.95
9610--9707
31
3.2
31
83
1
126
33
26
20
19
1.96
10011--10052
2
21.0
2
100
0
84
50
0
0
50
1.00
11509--11568
30
2.0
30
100
0
120
43
16
3
36
1.65
14001--14042
21
2.0
21
100
0
84
66
4
19
9
1.38
14210--14256
22
2.1
22
96
0
85
42
4
6
46
1.48
14210--14252
11
3.9
11
90
0
68
41
4
6
46
1.51
14393--14422
14
2.2
13
94
5
51
53
0
3
43
1.17
15240--15467
38
6.0
38
90
1
350
21
35
19
23
1.96
15240--15467
75
3.0
75
90
1
357
21
35
19
23
1.96
15240--15467
113
2.0
114
93
0
386
21
35
19
23
1.96

Tables:   1

The End!