Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001339.1 Corchorus capsularis cultivar CVL-1 contig01339, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1768
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38


Found at i:451 original size:2 final size:2

Alignment explanation


    Indices: 406--431  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        396 TGAGTGTATC

                                                  
        406 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

        432 ACTGAAAATG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:1739 original size:19 final size:20

Alignment explanation


    Indices: 1703--1740  Score: 53
    Period size: 19  Copynumber: 1.9  Consensus size: 20

       1693 TTACTATTAT

                                
       1703 TTTTGAATTTAATATTTTAC
          1 TTTTGAATTTAATATTTTAC

                                
       1723 TTTT-AATTTCAAT-TTTTA
          1 TTTTGAATTT-AATATTTTA

       1741 AATTGTCAAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  19   10  0.59
  20    7  0.41

ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63


Consensus pattern (20 bp):   
TTTTGAATTTAATATTTTAC
Done.