Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013392.1 Corchorus capsularis cultivar CVL-1 contig13413, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131971

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35--112
22
3.6
21
79
8
68
39
10
15
34
1.81
98--139
22
1.9
22
95
0
75
33
11
14
40
1.82
233--321
22
4.0
22
77
11
101
33
7
22
35
1.83
1320--1344
2
12.5
2
100
0
50
48
0
0
52
1.00
8528--8563
11
3.6
10
89
10
56
0
8
0
91
0.41
8526--8562
19
2.1
17
90
10
56
0
10
0
89
0.49
15134--15201
26
2.6
26
88
0
100
54
11
1
32
1.46
15263--15308
22
2.1
22
83
0
56
47
2
4
45
1.34
15261--15314
21
2.6
21
74
8
56
51
1
3
42
1.30
15355--15388
12
2.8
12
90
0
50
26
0
0
73
0.83
15355--15387
13
2.6
13
90
4
50
24
0
0
75
0.80
19331--19406
40
1.9
40
94
0
134
32
10
30
26
1.90
25950--25994
6
7.5
6
89
0
63
44
6
0
48
1.29
25950--25994
10
4.5
10
91
0
63
44
6
0
48
1.29
25950--25994
4
11.2
4
90
0
63
44
6
0
48
1.29
32250--32305
29
1.9
29
88
0
85
35
3
17
42
1.67
52351--52454
16
6.6
16
86
2
156
8
12
36
42
1.74
52351--52452
47
2.1
48
89
1
152
8
12
35
43
1.74
52981--53052
31
2.3
31
76
4
83
58
11
4
26
1.50
53222--53279
16
3.6
16
71
0
53
6
17
48
27
1.72
57984--58045
28
2.3
27
82
2
70
17
19
20
41
1.90
58002--58062
28
2.1
30
85
14
83
14
19
26
39
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61960--62006
17
2.7
17
83
6
60
59
2
2
36
1.21
65595--65670
31
2.5
31
82
0
80
32
27
22
17
1.96
68563--68688
63
2.0
63
92
0
207
28
23
12
35
1.91
69344--69499
78
2.0
78
84
2
206
30
18
26
23
1.98
75396--75423
2
14.0
2
100
0
56
50
0
0
50
1.00
79981--80010
2
15.5
2
93
6
53
53
0
0
46
1.00
84955--85101
34
4.4
34
89
2
192
29
7
22
40
1.81
85073--85178
41
2.7
39
80
12
110
34
5
20
38
1.77
85149--85206
28
2.1
27
87
3
80
31
8
22
37
1.84
84957--85242
34
8.2
36
76
10
145
32
6
20
39
1.80
85026--85281
144
1.8
140
88
5
397
32
6
20
41
1.77
85222--85344
62
2.0
60
84
7
160
31
6
20
41
1.78
85355--85413
28
2.1
28
83
0
73
33
6
22
37
1.80
85439--85821
74
5.2
74
93
2
653
45
16
16
22
1.85
85461--85828
37
9.9
37
77
5
377
45
16
16
20
1.85
87515--87579
14
4.6
14
78
10
53
32
9
10
47
1.70
87529--87560
16
2.1
15
94
5
55
25
6
12
56
1.59
100487--100722
117
2.0
117
99
0
463
30
20
20
27
1.98
102273--102438
60
2.7
60
83
7
183
27
18
16
36
1.93
102585--102636
27
1.9
27
84
7
70
28
0
36
34
1.58
103677--103907
127
1.8
127
89
1
365
38
9
17
34
1.83
109938--109969
2
16.5
2
93
6
57
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114369--114531
22
7.5
22
74
8
129
39
10
15
34
1.81
118097--118124
2
14.0
2
100
0
56
0
0
50
50
1.00
129807--129859
24
2.2
24
89
0
79
39
1
16
41
1.60
131133--131173
20
2.1
19
90
4
64
43
2
0
53
1.13
131925--131961
2
18.5
2
100
0
74
48
0
0
51
1.00

Tables:   1

The End!