Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013396.1 Corchorus capsularis cultivar CVL-1 contig13417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4727
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33


Found at i:3734 original size:2 final size:2

Alignment explanation


    Indices: 3727--3765  Score: 60
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       3717 GAAATAAATG

                                        *                            
       3727 AT AT AT AT AT AT AT AT AT AA AT GAT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT

       3766 GGTAGGAGGG


Statistics
Matches: 34,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
   2   32  0.94
   3    2  0.06

ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46


Consensus pattern (2 bp):   
AT

Found at i:3750 original size:23 final size:23

Alignment explanation


    Indices: 3720--3765  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3710 CCAAATTGAA

                                   
       3720 ATAAATGATATATATATATATAT
          1 ATAAATGATATATATATATATAT

                                   
       3743 ATAAATGATATATATATATATAT
          1 ATAAATGATATATATATATATAT

       3766 GGTAGGAGGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43


Consensus pattern (23 bp):   
ATAAATGATATATATATATATAT
Done.