Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013397.1 Corchorus capsularis cultivar CVL-1 contig13418, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138448

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6118--6147
14
2.1
14
93
0
51
0
60
0
40
0.97
8166--8191
3
8.7
3
100
0
52
69
0
0
30
0.89
8647--8820
88
2.0
87
90
1
276
32
21
22
24
1.98
16735--16761
2
13.5
2
100
0
54
51
0
0
48
1.00
24979--25014
6
6.2
6
87
6
56
66
13
16
2
1.36
26781--26810
16
1.9
15
93
6
51
0
30
3
66
1.07
29339--29388
19
2.6
19
93
6
84
58
2
0
40
1.10
29771--29799
3
9.7
3
100
0
58
65
0
0
34
0.93
38445--38474
2
15.0
2
92
0
51
50
3
0
46
1.18
47069--47349
110
2.5
109
90
5
411
39
11
1
47
1.50
48820--48876
21
2.9
19
84
5
69
33
19
10
36
1.86
53798--54051
60
4.2
60
87
0
355
24
8
41
25
1.83
57744--57777
11
3.1
11
86
0
50
32
0
14
52
1.42
74454--74495
21
2.0
21
100
0
84
9
19
19
52
1.72
85768--85811
2
21.5
2
95
4
79
2
47
0
50
1.13
90908--90963
28
2.0
29
89
3
87
41
12
25
21
1.88
101294--101384
30
3.0
30
100
0
182
27
6
16
49
1.70
102285--102403
60
2.0
60
98
0
229
18
34
15
31
1.92
111515--111545
16
1.9
16
93
0
53
0
19
0
80
0.71
113259--113325
31
2.2
31
78
2
73
17
17
29
34
1.94
115414--115485
36
2.0
36
97
0
135
45
11
20
22
1.82
117230--117295
30
2.2
30
84
10
82
46
10
19
22
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121949--121980
16
2.0
16
100
0
64
25
25
6
43
1.77
124719--124778
30
2.0
30
86
0
84
33
20
5
41
1.74
125641--125667
14
1.9
14
100
0
54
51
18
7
22
1.70
126999--127049
25
2.0
25
92
0
84
19
19
19
41
1.91
131667--131729
31
2.0
31
100
0
126
28
15
9
46
1.78
132076--132121
20
2.2
21
92
3
76
30
6
13
50
1.66
138161--138202
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!