Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013398.1 Corchorus capsularis cultivar CVL-1 contig13419, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10779
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:4192 original size:18 final size:18

Alignment explanation


    Indices: 4169--4203  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       4159 AAGCAAATGG

                               
       4169 AAAAG-AGACGAATGAGAA
          1 AAAAGAAGAC-AATGAGAA

                             
       4187 AAAAGAAGACAATGAGA
          1 AAAAGAAGACAATGAGA

       4204 GTAGGTGGAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  18   12  0.75
  19    4  0.25

ACGTcount: A:0.63, C:0.06, G:0.26, T:0.06


Consensus pattern (18 bp):   
AAAAGAAGACAATGAGAA
Done.