Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013400.1 Corchorus capsularis cultivar CVL-1 contig13421, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70506

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2348--2457
16
6.8
16
84
6
134
23
18
30
27
1.97
5310--5697
156
2.5
155
76
7
390
33
18
16
31
1.93
6794--6878
16
5.3
16
65
10
57
14
11
35
38
1.82
6802--6878
32
2.4
32
89
4
111
15
11
35
37
1.84
7020--7058
20
2.0
20
85
10
53
35
5
5
53
1.45
7093--7143
16
3.2
15
81
10
57
7
7
27
56
1.55
7101--7143
16
2.7
16
89
10
70
4
6
27
60
1.43
8852--8882
16
1.9
16
93
0
53
35
6
32
25
1.82
24129--24165
2
18.5
2
89
10
58
48
2
0
48
1.15
24129--24165
19
1.9
19
94
0
65
48
2
0
48
1.15
25803--25965
81
2.0
81
98
0
317
23
25
17
33
1.96
27983--28045
19
3.4
19
69
18
60
25
6
36
31
1.81
27974--28045
37
1.9
38
91
2
119
23
5
38
31
1.78
29475--29528
26
2.1
26
92
0
90
37
12
27
22
1.91
29601--29632
12
2.6
13
85
14
50
31
25
18
25
1.98
39494--39530
17
2.2
17
90
9
58
62
0
21
16
1.33
52353--52436
33
2.5
33
92
3
134
13
36
36
13
1.83
52520--52584
31
2.1
32
91
2
105
15
40
36
7
1.76
57286--57603
169
1.9
169
100
0
636
28
12
15
43
1.83
58640--58795
78
2.0
78
83
2
197
31
18
26
23
1.98
60099--60226
64
2.0
64
100
0
256
37
6
9
46
1.61
68606--68669
29
2.2
28
83
8
74
28
9
26
35
1.87

Tables:   1

The End!