Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013402.1 Corchorus capsularis cultivar CVL-1 contig13423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54000

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6118--6149
16
2.0
16
93
0
55
15
0
12
71
1.14
24366--24404
19
2.1
19
100
0
78
5
10
30
53
1.56
27089--27438
87
4.0
87
94
0
592
16
18
30
35
1.92
43396--43528
36
3.8
36
80
6
155
42
8
21
27
1.81
43378--43536
36
4.6
34
75
6
149
44
8
21
26
1.80
43378--43552
69
2.5
69
90
3
262
44
8
21
26
1.81
43570--43706
36
3.8
36
91
1
222
47
13
10
27
1.77
43570--43706
71
1.9
71
92
0
229
47
13
10
27
1.77
43777--44012
11
21.2
11
80
4
222
49
8
22
19
1.76
43766--44012
45
5.5
45
78
8
238
49
8
22
19
1.75
43777--44012
34
7.1
33
80
6
242
49
8
22
19
1.76
44007--44288
36
7.9
36
88
2
372
41
9
21
26
1.84
44002--44288
106
2.7
106
90
3
425
42
9
21
26
1.84
44003--44356
72
4.9
70
81
8
256
42
9
20
26
1.83
48927--49045
62
1.9
62
89
0
184
35
12
10
42
1.77
50449--50481
2
16.0
2
93
6
57
48
0
3
48
1.17
50552--51716
584
2.0
575
86
5
1610
41
10
15
31
1.81
51706--51740
16
2.2
16
100
0
70
40
0
17
42
1.49
52030--52139
54
2.0
54
100
0
220
33
10
12
42
1.78

Tables:   1

The End!