Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013403.1 Corchorus capsularis cultivar CVL-1 contig13424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29247

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2030--2070
20
2.1
20
86
4
57
9
7
9
73
1.26
2536--2570
15
2.3
15
90
0
52
51
0
0
48
1.00
7734--7767
14
2.2
16
90
10
54
58
11
14
14
1.63
15727--15914
48
3.9
48
90
0
286
21
36
19
22
1.95
15769--15902
23
5.7
22
66
19
65
17
38
20
23
1.93
15996--16037
13
3.2
13
77
16
50
21
47
16
14
1.82
19326--19488
31
5.5
31
76
12
146
17
21
26
34
1.95
19377--19479
53
1.9
53
90
0
161
16
19
27
36
1.93
20344--20516
83
2.1
84
93
4
296
49
6
9
34
1.63
20561--20719
73
2.2
71
87
4
221
52
1
11
34
1.46
20685--20972
147
2.0
147
97
0
549
44
7
15
32
1.74
21586--21640
27
2.0
27
92
0
92
36
12
23
27
1.91
22329--22382
20
2.7
19
78
15
56
46
3
0
50
1.19
23694--23751
25
2.2
28
84
9
77
55
6
1
36
1.37
23694--23753
28
2.1
28
82
11
70
56
6
1
35
1.35
23893--23917
13
1.9
13
100
0
50
40
20
8
32
1.81
24447--24485
15
2.5
16
91
4
62
53
0
0
46
1.00

Tables:   1

The End!