Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013404.1 Corchorus capsularis cultivar CVL-1 contig13425, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25704

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
191--221
2
15.5
2
100
0
62
51
0
0
48
1.00
381--473
44
2.3
39
83
10
107
30
18
5
46
1.71
394--482
44
2.0
44
95
0
160
21
20
7
50
1.73
1945--1979
17
2.1
17
94
0
61
45
0
14
40
1.45
4468--4505
19
2.0
20
85
15
53
28
5
2
63
1.30
4707--4806
44
2.2
44
89
6
157
36
13
18
33
1.89
4720--4853
46
3.0
45
85
7
157
35
11
16
37
1.84
4674--4858
22
8.3
22
72
12
126
34
9
18
38
1.83
4871--4921
23
2.3
22
82
3
57
47
3
17
31
1.66
4923--4985
22
2.8
23
79
11
60
34
7
20
36
1.82
5123--5205
22
3.8
21
74
3
76
38
12
13
36
1.82
5127--5221
44
2.2
44
80
3
102
40
12
15
31
1.85
5215--5266
22
2.4
22
90
3
79
48
5
7
38
1.56
5359--5772
22
19.0
22
68
12
122
38
9
15
36
1.81
5513--5599
23
3.7
23
87
4
113
43
5
11
39
1.65
5687--5772
45
1.9
45
80
4
102
36
12
15
36
1.85
5796--5845
22
2.3
21
86
10
66
56
4
12
28
1.54
8634--8684
25
2.0
25
85
11
68
52
1
7
37
1.42
9420--9462
19
2.4
17
80
7
50
48
2
0
48
1.14
10519--10575
29
2.0
29
85
0
78
50
21
21
7
1.71
18119--18293
84
2.1
84
100
0
350
37
8
17
37
1.79
21660--21702
22
1.9
23
95
4
79
30
18
13
37
1.90

Tables:   1

The End!