Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013406.1 Corchorus capsularis cultivar CVL-1 contig13427, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10257
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30


Found at i:4831 original size:84 final size:83

Alignment explanation


    Indices: 4705--4864  Score: 268
    Period size: 84  Copynumber: 1.9  Consensus size: 83

       4695 AAATTATAAT

                                                *                            
       4705 ATATATCTAAGTTATGTAATTAAAATAGTAATAATGGTAAAAATAAAATAGTTATAAAGAGATTA
          1 ATATATCTAAGTTATGTAATTAAAATAGTAATAATGATAAAAATAAAATAGTTATAAAGA-ATTA

                               
       4770 GATTTAATTAAAAATTCTA
         65 GATTTAATTAAAAATTCTA

                          * *                                                
       4789 ATATATCTAAGTTTTTTTAATTAAAATAGTAA-AATGATAAAAATAAAATAGTTATAAAGAATTA
          1 ATATATCTAAG-TTATGTAATTAAAATAGTAATAATGATAAAAATAAAATAGTTATAAAGAATTA

                        
       4853 GATTTAATTAAA
         65 GATTTAATTAAA

       4865 TAAAAATAGA


Statistics
Matches: 72,  Mismatches: 3, Indels: 3
        0.92            0.04        0.04

Matches are distributed among these distances:
  83   16  0.22
  84   38  0.53
  85   18  0.25

ACGTcount: A:0.52, C:0.02, G:0.09, T:0.37


Consensus pattern (83 bp):   
ATATATCTAAGTTATGTAATTAAAATAGTAATAATGATAAAAATAAAATAGTTATAAAGAATTAG
ATTTAATTAAAAATTCTA
Done.