Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013407.1 Corchorus capsularis cultivar CVL-1 contig13428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25771

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3124--3182
22
2.7
21
76
16
66
37
13
10
38
1.79
3245--3418
22
7.8
22
68
19
76
36
8
12
42
1.73
8600--8649
26
1.9
26
95
0
91
24
8
40
28
1.83
9060--9109
22
2.3
22
89
3
75
18
20
18
44
1.88
9070--9119
22
2.3
22
86
6
66
20
18
14
48
1.82
9774--9808
17
2.1
17
100
0
70
40
5
0
54
1.24
9769--9808
17
2.3
18
91
4
57
40
5
0
55
1.22
9820--9893
8
9.9
8
70
14
59
44
1
4
50
1.29
9820--9897
14
5.4
14
76
14
61
43
1
3
51
1.28
10643--10685
11
3.9
11
87
0
59
44
6
6
41
1.58
10639--10685
22
2.1
22
92
0
76
44
6
6
42
1.55
15200--15685
49
10.0
47
83
5
454
23
27
15
33
1.95
15200--15678
98
4.9
98
84
4
538
22
28
15
33
1.95
18731--18856
63
2.0
63
93
0
216
13
12
42
30
1.82
23184--23230
22
2.1
22
96
0
85
42
4
6
46
1.48
23184--23226
11
3.9
11
90
0
68
41
4
6
46
1.51

Tables:   1

The End!