Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013408.1 Corchorus capsularis cultivar CVL-1 contig13429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59194

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2138--2169
2
16.0
2
100
0
64
50
0
0
50
1.00
4145--4265
57
2.2
55
88
5
172
60
5
3
30
1.36
5202--5279
38
2.1
38
92
4
131
29
19
2
48
1.62
29565--29602
15
2.5
15
91
0
58
21
0
65
13
1.26
29779--29837
30
2.0
30
86
6
84
27
6
8
57
1.53
32994--33024
15
2.1
15
100
0
62
38
6
12
41
1.69
42083--42326
122
2.0
122
95
0
434
43
14
12
29
1.82
45354--45389
15
2.4
15
95
0
63
22
36
13
27
1.92
46065--46132
34
2.1
31
83
8
82
58
7
2
30
1.40
46796--46950
78
2.0
78
93
0
265
20
10
18
50
1.77
51089--51894
331
2.4
328
79
8
828
36
16
15
31
1.90
52072--52111
17
2.5
15
85
14
62
60
0
15
25
1.35
52075--52109
17
2.1
17
100
0
70
60
0
17
22
1.37
58573--58650
22
3.5
22
78
0
84
35
20
10
33
1.86
58655--58779
42
2.9
44
78
4
128
39
16
10
34
1.82
58740--58799
22
2.7
22
86
0
75
35
23
8
33
1.85
58747--58844
44
2.2
44
82
10
121
27
21
12
38
1.89
58747--58842
22
4.4
22
81
12
99
28
20
12
38
1.89

Tables:   1

The End!