genome.fa.s13413.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013413.1 Corchorus capsularis cultivar CVL-1 contig13434, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145836

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4171--4218	6	8.0	6	88	0	60	60	31	2	6	1.33
4168--4217	24	2.1	24	88	0	73	58	32	4	6	1.41
14116--14140	1	25.0	1	100	0	50	0	0	100	0	0.00
21879--22033	78	2.0	75	93	3	265	36	7	2	52	1.44
33082--33180	52	1.9	50	86	8	137	18	17	24	40	1.91
39853--39909	8	7.0	8	75	11	53	3	3	12	80	0.96
41431--41560	65	2.0	65	98	0	251	30	15	28	26	1.96
44386--44533	60	2.5	59	78	4	161	33	16	17	33	1.92
49849--49884	18	2.0	18	100	0	72	38	27	5	27	1.79
51017--51096	23	3.2	23	74	19	88	51	6	5	37	1.49
51034--51117	29	3.0	28	81	13	100	48	5	5	39	1.52
51096--51203	53	2.0	53	98	0	207	51	7	6	34	1.55
51332--51358	2	13.5	2	100	0	54	51	0	0	48	1.00
61096--61219	62	2.0	62	100	0	248	25	3	43	27	1.70
61677--61734	21	2.9	19	84	5	71	29	24	12	34	1.91
68438--68526	28	3.2	28	93	0	151	12	24	32	30	1.92
68418--68526	56	1.9	56	83	0	137	15	26	28	29	1.96
68542--68610	27	2.6	27	76	0	75	8	31	42	17	1.80
68663--68788	29	4.4	29	92	3	195	19	24	26	30	1.98
68915--68986	29	2.5	29	93	0	126	19	19	29	31	1.96
68915--69010	29	3.3	29	84	4	97	18	23	27	30	1.98
70131--70165	3	11.7	3	90	0	52	60	2	2	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70174--70201	3	9.3	3	100	0	56	0	32	0	67	0.91
70869--70903	1	35.0	1	100	0	70	100	0	0	0	0.00
75442--75466	3	8.3	3	100	0	50	68	0	0	32	0.90
78177--78215	2	19.5	2	100	0	78	51	0	48	0	1.00
82153--82197	22	2.0	22	100	0	90	24	17	26	31	1.97
89774--89862	30	2.9	31	79	3	99	34	23	24	16	1.95
89861--89940	31	2.6	31	90	4	108	27	31	28	12	1.93
91150--91174	2	12.5	2	100	0	50	52	0	0	48	1.00
95970--96026	2	28.0	2	96	3	105	49	1	0	49	1.11
103426--103467	20	2.1	21	86	8	61	14	42	9	33	1.78
105362--105417	24	2.3	25	87	6	80	50	10	3	35	1.55
106858--106922	31	2.1	31	88	5	96	29	12	26	32	1.92
107994--108020	1	27.0	1	100	0	54	100	0	0	0	0.00
126534--126609	26	3.2	26	63	24	67	27	17	13	42	1.86
126499--126634	45	3.0	45	98	0	263	26	18	13	41	1.87
126504--126578	25	3.2	25	62	30	65	26	20	13	40	1.89
126976--127009	11	3.2	10	91	8	50	76	8	8	5	1.15
128850--128874	2	12.5	2	100	0	50	48	0	0	52	1.00
139230--139276	24	2.0	24	95	0	85	23	21	14	40	1.90
141373--141406	2	17.0	2	100	0	68	50	0	0	50	1.00
145199--145268	28	2.6	27	84	8	99	18	18	10	52	1.72
145343--145369	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1

The End!