Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013417.1 Corchorus capsularis cultivar CVL-1 contig13438, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30259

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1340--1400
30
2.0
30
84
6
79
24
19
9
45
1.80
3815--3858
21
2.1
21
100
0
88
29
29
22
18
1.97
5080--5262
91
2.0
91
97
0
348
23
28
24
22
1.99
8704--8747
22
2.0
22
95
0
79
25
0
18
56
1.41
9188--10015
35
23.9
35
88
4
1139
39
10
17
33
1.83
13634--13660
2
13.5
2
100
0
54
51
0
0
48
1.00
16722--16779
29
2.0
29
83
12
75
25
15
27
31
1.96
18470--18508
6
6.5
6
93
0
69
2
33
28
35
1.71
19232--19294
14
4.3
14
76
8
54
42
7
15
33
1.76
19234--19265
15
2.1
15
94
0
55
53
6
15
25
1.65
19232--19294
29
2.1
30
82
2
74
42
7
15
33
1.76
21075--21117
22
2.0
22
100
0
86
23
23
11
41
1.87

Tables:   1

The End!