Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001342.1 Corchorus capsularis cultivar CVL-1 contig01342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8745
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35


Found at i:145 original size:2 final size:2

Alignment explanation


    Indices: 138--167  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        128 CATCATCTTC

                                                        
        138 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        168 TATTCTTTGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:1135 original size:2 final size:2

Alignment explanation


    Indices: 1128--1153  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       1118 ACGTATTTAC

                                                  
       1128 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

       1154 TTTACGTTGG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:5694 original size:2 final size:2

Alignment explanation


    Indices: 5687--5713  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       5677 CAATTGCATG

                                                    
       5687 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

       5714 GTTGATAAGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.