Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013423.1 Corchorus capsularis cultivar CVL-1 contig13444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68420

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7719--7796
21
3.8
21
66
8
61
21
12
5
60
1.52
7723--7822
42
2.4
42
98
1
193
25
16
6
53
1.65
9420--9464
3
14.7
3
90
4
72
0
31
2
66
1.04
12620--12645
1
26.0
1
100
0
52
0
0
0
100
0.00
13393--13462
30
2.4
30
85
2
97
32
12
27
27
1.93
13623--13666
14
3.1
14
77
6
52
56
6
20
15
1.62
13623--13667
15
3.1
15
80
3
56
57
6
20
15
1.60
14019--14220
41
4.8
42
78
14
186
26
15
35
22
1.94
14227--14381
83
1.9
84
82
4
197
30
16
27
24
1.97
14672--14839
80
2.1
79
91
1
264
28
16
26
29
1.96
14856--14925
30
2.4
30
87
2
106
32
14
27
25
1.94
15097--15131
16
2.2
16
89
0
52
68
5
17
8
1.35
30438--30466
2
15.0
2
92
7
51
51
0
0
48
1.00
31347--31392
24
2.0
23
83
12
58
36
0
10
52
1.37
31685--31731
16
2.9
15
81
12
58
42
2
0
55
1.12
32789--32825
2
18.5
2
100
0
74
51
0
0
48
1.00
37403--37437
7
5.0
7
100
0
70
42
14
0
42
1.45
43016--43322
166
1.8
167
92
2
528
29
8
19
42
1.80
58879--58933
27
2.0
27
100
0
110
52
14
25
7
1.67
65854--66290
165
2.6
165
85
3
592
29
14
16
40
1.87
67047--67096
20
2.5
20
77
12
57
34
14
8
44
1.74
67674--67713
20
2.0
21
85
5
55
37
22
17
22
1.94

Tables:   1

The End!