genome.fa.s13425.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013425.1 Corchorus capsularis cultivar CVL-1 contig13446, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169683

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247--302	6	9.2	6	78	3	58	1	21	1	75	0.99
417--449	1	33.0	1	100	0	66	0	0	0	100	0.00
2487--2538	22	2.4	22	93	3	88	46	7	15	30	1.74
2652--2676	3	8.3	3	100	0	50	36	0	32	32	1.58
4119--4195	39	2.0	39	94	2	138	29	16	14	38	1.88
4568--4611	22	2.0	22	100	0	88	31	31	18	18	1.95
16421--16465	23	2.0	23	86	0	63	24	6	22	46	1.75
17820--17863	15	3.0	14	87	9	61	29	4	4	61	1.36
23729--23796	31	2.2	30	82	7	75	16	27	23	32	1.96
23743--23847	31	3.4	31	86	2	140	17	26	25	30	1.97
24994--25027	2	17.0	2	100	0	68	50	0	0	50	1.00
48890--48923	17	2.0	17	88	0	50	70	2	23	2	1.15
60267--60437	88	2.0	88	95	1	308	36	14	16	32	1.88
68788--68817	2	15.0	2	100	0	60	50	0	0	50	1.00
73261--73317	16	3.2	16	73	21	60	61	7	5	26	1.43
74180--75320	562	2.0	562	84	4	1462	32	20	13	33	1.92
78167--78200	11	3.2	10	84	15	50	50	17	2	29	1.61
81499--81536	11	3.5	11	85	10	51	57	2	0	39	1.12
81841--81894	27	2.0	27	96	0	99	31	14	1	51	1.53
81848--81905	27	2.1	27	81	6	64	34	12	3	50	1.57
81905--81932	14	2.0	14	100	0	56	71	7	0	21	1.09
93098--93174	38	2.0	38	97	0	145	36	16	15	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93404--93483	28	2.8	28	84	5	106	37	12	23	26	1.90
108385--108753	22	16.6	22	65	13	105	36	14	10	39	1.80
108576--108646	25	2.9	25	76	12	76	33	18	7	40	1.77
108834--109004	44	3.9	44	75	10	134	36	12	8	42	1.73
108861--108983	22	5.6	22	77	2	90	34	13	8	43	1.74
108920--109067	22	6.7	22	72	15	83	33	14	12	39	1.84
111054--111086	17	1.9	17	93	0	57	27	36	9	27	1.87
112571--112603	8	4.2	8	88	7	50	9	0	3	87	0.63
112571--112603	15	2.2	15	94	0	57	9	0	3	87	0.63
115616--115791	37	4.8	37	95	0	289	39	8	27	24	1.84
115616--115842	37	6.3	37	88	5	286	37	9	26	25	1.87
115784--115855	32	2.2	32	95	0	126	34	9	25	30	1.88
115834--115945	37	3.1	37	84	6	160	41	11	17	28	1.85
115802--115945	34	4.1	36	81	8	165	39	11	20	29	1.87
117958--118061	52	2.0	52	98	0	199	39	7	15	37	1.76
118129--118161	17	1.9	17	100	0	66	51	12	12	24	1.73
124039--124068	10	3.0	10	100	0	60	10	60	30	0	1.30
130300--130378	30	2.6	30	100	0	158	24	12	10	53	1.69
132096--132160	33	2.0	33	100	0	130	33	9	6	50	1.59
137989--138023	18	1.9	18	88	0	52	40	8	20	31	1.82
139562--139641	35	2.4	34	89	4	117	46	25	8	20	1.79
139667--139831	81	2.0	81	98	0	321	57	9	16	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141203--141238	3	12.0	3	100	0	72	0	33	0	66	0.92
141813--141870	29	2.0	29	93	0	98	32	36	1	29	1.68
141825--141870	15	3.1	16	72	18	53	30	39	0	30	1.57
142305--142370	24	2.8	24	75	9	64	42	3	0	54	1.15
144600--144667	33	2.1	33	94	0	118	13	13	26	47	1.79
161334--161371	18	2.1	18	100	0	76	26	5	10	57	1.53
161535--161589	24	2.2	26	87	6	78	52	0	7	40	1.29
161849--161927	33	2.4	33	87	4	106	20	40	27	11	1.87
164092--164180	33	2.8	33	82	3	92	12	33	38	15	1.85
167403--167514	35	3.3	35	66	16	92	31	19	11	37	1.88
169012--169055	19	2.5	17	75	13	52	38	2	50	9	1.47

Tables:   1

The End!