genome.fa.s13438.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013438.1 Corchorus capsularis cultivar CVL-1 contig13459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51601

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2911--2940	16	1.9	16	93	6	53	73	6	13	6	1.24
5254--5304	25	2.0	25	100	0	102	41	19	11	27	1.86
6810--7228	116	3.6	116	90	1	626	29	33	20	17	1.95
6806--7228	173	2.4	173	86	4	557	29	33	20	17	1.95
6806--7228	58	7.3	58	87	4	559	29	33	20	17	1.95
6810--7228	231	1.8	231	88	0	649	29	33	20	17	1.95
7682--7835	29	5.3	29	91	0	238	27	27	22	22	1.99
7966--8307	27	12.6	27	90	2	447	23	32	23	21	1.98
8320--8387	27	2.5	27	80	0	73	25	42	26	5	1.77
8348--8427	27	3.0	27	70	7	81	20	38	33	7	1.80
9383--9463	34	2.4	35	76	14	89	20	18	24	35	1.95
9451--9476	13	2.0	13	100	0	52	23	23	30	23	1.99
21721--21770	25	2.0	25	100	0	100	48	8	16	28	1.74
25100--25366	107	2.5	107	88	3	396	41	8	7	41	1.65
36003--36083	39	2.1	39	97	0	153	43	8	3	44	1.52
38050--38193	69	2.1	69	98	0	279	34	9	8	47	1.67
38461--38545	23	3.7	23	88	1	118	38	11	7	42	1.69
38241--38734	22	22.6	22	70	13	211	36	14	10	38	1.80
38840--39231	22	17.6	22	69	13	151	35	16	9	38	1.81
39267--39423	22	7.3	22	75	9	92	39	17	8	33	1.81
39321--39424	22	5.1	20	79	8	93	37	14	10	37	1.81
39344--39422	19	3.9	19	75	14	70	37	12	10	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40424--40458	18	1.9	18	88	0	52	42	5	14	37	1.69
41329--41578	71	3.6	71	83	3	321	36	21	4	37	1.75
41527--41706	96	1.9	96	96	0	333	38	19	3	38	1.68
41599--41732	65	2.2	63	81	10	152	37	16	4	41	1.69
46934--46971	18	2.1	19	90	5	60	23	10	18	47	1.79
48408--48435	1	28.0	1	100	0	56	0	0	0	100	0.00
50609--50653	20	2.1	22	92	8	76	53	0	8	37	1.32
51507--51551	22	2.0	22	91	0	72	24	15	8	51	1.72

Tables:   1

The End!