genome.fa.s13439.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013439.1 Corchorus capsularis cultivar CVL-1 contig13460, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47286

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2008--2111	51	2.0	51	100	0	208	26	24	13	35	1.92
6045--6080	17	2.1	17	94	0	63	47	0	13	38	1.44
6568--6649	40	2.0	40	90	0	128	39	9	8	42	1.68
8409--8442	3	11.3	3	100	0	68	32	0	0	67	0.91
11422--11453	3	10.7	3	93	0	55	3	0	28	68	1.04
11419--11450	15	2.1	15	100	0	64	6	0	25	68	1.12
11974--12013	14	3.1	14	75	20	50	35	12	10	42	1.76
13662--13687	13	2.0	13	100	0	52	69	0	0	30	0.89
17118--17365	78	3.2	78	89	2	381	48	1	13	37	1.50
17633--17659	14	1.9	14	100	0	54	22	25	22	29	1.99
27316--27340	12	2.1	12	100	0	50	44	0	40	16	1.47
32541--32586	21	2.2	21	96	0	83	43	10	10	34	1.75
36674--36703	13	2.2	14	94	5	53	46	6	0	46	1.29
38181--38216	2	19.5	2	83	16	51	47	0	0	52	1.00
39643--39668	13	2.0	13	100	0	52	38	0	23	38	1.55
43793--43849	22	2.5	22	75	13	62	14	19	42	24	1.88
46202--46304	54	1.9	54	81	0	125	32	32	16	19	1.94
46279--46348	27	2.6	27	86	0	86	37	41	5	15	1.71
46658--46716	14	4.1	14	86	4	91	69	3	0	27	1.04
46733--46806	32	2.3	31	80	13	78	16	36	37	9	1.81
46764--46857	32	2.9	31	82	6	116	15	37	35	11	1.85
46764--46913	32	4.7	32	79	3	106	13	40	34	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46961--47034	32	2.3	32	83	0	85	9	40	36	13	1.77
47040--47079	20	2.0	20	95	0	71	27	20	5	47	1.70

Tables:   1

The End!