Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001344.1 Corchorus capsularis cultivar CVL-1 contig01344, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 798

Length: 1330
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1070 original size:17 final size:17

Alignment explanation


    Indices: 1048--1091  Score: 88
    Period size: 17  Copynumber: 2.6  Consensus size: 17

       1038 ATCATATATA

                             
       1048 ATATATAATGTATTATC
          1 ATATATAATGTATTATC

                             
       1065 ATATATAATGTATTATC
          1 ATATATAATGTATTATC

                      
       1082 ATATATAATG
          1 ATATATAATG

       1092 AACGGATACT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   27  1.00

ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45


Consensus pattern (17 bp):   
ATATATAATGTATTATC
Done.