Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013440.1 Corchorus capsularis cultivar CVL-1 contig13461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65237

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12958--13107
74
2.0
74
98
0
291
37
12
13
36
1.83
14546--14577
13
2.5
13
94
0
55
12
50
6
31
1.65
14677--14757
40
2.0
41
85
4
112
25
9
18
45
1.80
15404--15448
16
2.8
16
87
9
65
40
42
15
2
1.59
16349--16399
25
2.0
25
85
11
68
52
1
7
37
1.42
17774--17815
17
2.4
18
76
11
52
28
47
21
2
1.63
18639--18667
1
29.0
1
100
0
58
100
0
0
0
0.00
21023--21115
48
1.9
48
86
4
134
36
11
18
33
1.87
21201--21342
41
3.6
41
72
24
140
25
9
13
51
1.71
21235--21303
37
2.0
35
86
13
99
26
8
14
50
1.71
21275--21399
62
2.1
59
86
8
175
23
9
13
53
1.69
24735--24771
19
2.1
18
90
10
58
62
2
5
29
1.31
26007--26046
20
2.0
20
95
0
71
32
32
25
10
1.89
26048--26112
30
2.2
30
88
0
94
29
35
15
20
1.93
29159--29196
18
2.2
17
90
4
58
47
7
2
42
1.46
33156--33180
13
1.9
13
100
0
50
8
16
0
76
1.02
36865--36909
21
2.1
21
100
0
90
28
17
26
26
1.98
52409--52639
116
2.0
116
93
1
392
29
12
21
36
1.90
53585--53616
3
10.7
3
100
0
64
31
0
0
68
0.90
56481--56548
17
3.9
17
72
24
70
16
5
8
69
1.34
60197--60226
2
15.0
2
100
0
60
50
0
0
50
1.00
60304--60381
29
2.6
31
89
4
115
25
25
14
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61836--61905
27
2.5
28
88
2
97
15
17
22
44
1.86
61827--61905
27
2.9
27
86
1
95
16
18
24
40
1.91

Tables:   1

The End!