Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013445.1 Corchorus capsularis cultivar CVL-1 contig13466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17546
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33


Found at i:7267 original size:25 final size:27

Alignment explanation


    Indices: 7216--7281  Score: 84
    Period size: 30  Copynumber: 2.4  Consensus size: 27

       7206 ATGGCATTTA

                                          
       7216 TTTTTCTTAATTTAATTTTTGCCTAGCTAT
          1 TTTTTCTTAATTTAA-TTTT--CTAGCTAT

                                       
       7246 TTTTTCTTAATTTAA-TTT-TAGCTAT
          1 TTTTTCTTAATTTAATTTTCTAGCTAT

                        
       7271 TTTTT-TTAATT
          1 TTTTTCTTAATT

       7282 CATCCTCTTA


Statistics
Matches: 36,  Mismatches: 0, Indels: 6
        0.86            0.00        0.14

Matches are distributed among these distances:
  24    6  0.17
  25   12  0.33
  28    3  0.08
  30   15  0.42

ACGTcount: A:0.21, C:0.09, G:0.05, T:0.65


Consensus pattern (27 bp):   
TTTTTCTTAATTTAATTTTCTAGCTAT

Found at i:9551 original size:2 final size:2

Alignment explanation


    Indices: 9544--9575  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       9534 TTTTAGAAAG

                                                           
       9544 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       9576 GGTACATTTC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.