Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013446.1 Corchorus capsularis cultivar CVL-1 contig13467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48111

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2242--2377
67
2.0
67
98
0
263
33
11
13
41
1.80
2890--2948
16
3.7
16
79
0
73
49
32
13
5
1.64
3103--3219
15
7.5
15
72
14
94
40
35
7
17
1.78
3101--3234
31
4.2
32
88
2
200
39
36
8
14
1.78
3101--3234
63
2.1
63
100
0
268
39
36
8
14
1.78
3902--3955
26
2.1
26
100
0
108
66
18
3
11
1.37
5025--5054
2
15.0
2
100
0
60
50
0
0
50
1.00
8158--8190
16
2.0
17
94
5
59
51
0
42
6
1.26
8609--8666
21
2.8
21
97
0
107
50
18
24
6
1.72
13612--13980
167
2.3
162
83
10
440
35
8
4
51
1.52
14153--14211
31
1.9
31
85
0
82
25
15
8
50
1.71
15656--15698
21
2.0
21
90
0
68
18
37
9
34
1.83
18835--18864
6
5.0
6
100
0
60
0
33
16
50
1.46
20677--20714
13
2.9
13
100
0
76
21
15
7
55
1.66
21153--21217
30
2.2
30
91
0
103
38
7
21
32
1.82
24480--24511
11
2.9
11
95
0
55
31
28
25
15
1.96
24984--25014
4
7.8
4
100
0
62
25
22
0
51
1.48
24982--25031
8
6.6
8
82
13
52
32
18
0
50
1.47
25143--25198
26
2.2
25
87
12
78
37
7
0
55
1.27
25563--25617
15
3.4
16
80
12
60
50
36
7
5
1.53
27528--27563
18
2.0
18
94
0
63
16
19
16
47
1.83
42866--42918
18
2.8
20
76
23
60
64
5
28
1
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43046--43070
6
4.2
6
100
0
50
16
52
0
32
1.44

Tables:   1

The End!