Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013447.1 Corchorus capsularis cultivar CVL-1 contig13468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58115

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
551--577
9
3.0
9
100
0
54
55
11
33
0
1.35
571--624
21
2.6
21
88
8
76
66
3
27
1
1.19
761--802
6
7.0
6
100
0
84
16
50
0
33
1.46
1400--2020
309
2.0
309
100
0
1242
37
13
18
30
1.89
3088--3149
31
2.0
31
96
0
115
22
11
14
51
1.74
6919--6944
12
2.2
12
100
0
52
61
15
7
15
1.55
7401--7444
21
2.1
21
87
8
63
18
34
9
38
1.82
7761--7854
33
2.8
33
88
6
129
10
29
41
18
1.84
8016--8057
11
3.9
11
81
3
50
80
11
2
4
0.95
11661--11704
21
2.1
21
87
8
63
22
25
11
40
1.87
11703--11746
14
2.9
15
83
13
54
18
27
2
52
1.57
11754--11837
33
2.6
32
80
12
82
14
41
32
11
1.82
11779--11869
33
2.8
31
81
9
92
14
38
36
10
1.81
11938--12008
32
2.1
34
89
5
110
11
35
38
15
1.83
12192--12249
21
2.8
21
94
0
98
41
10
34
13
1.79
15496--15529
2
17.0
2
100
0
68
50
0
0
50
1.00
15975--16002
14
2.0
14
100
0
56
50
0
0
50
1.00
25474--25513
21
1.9
21
89
0
62
55
0
30
15
1.41
36827--36922
51
1.9
51
89
2
149
27
9
26
37
1.87
39578--39606
15
1.9
15
100
0
58
31
0
13
55
1.39
40349--40386
18
2.1
18
85
9
51
44
0
0
55
0.99
44585--44771
95
2.0
95
85
0
257
31
20
23
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44869--44894
2
13.0
2
100
0
52
50
0
0
50
1.00
53527--54059
267
2.0
267
99
0
1048
31
19
17
31
1.95
57417--57458
19
2.3
18
87
4
57
45
14
0
40
1.45
57821--57977
74
2.1
74
92
2
262
22
29
8
39
1.83
57984--58022
20
1.9
21
94
5
71
33
0
7
58
1.26

Tables:   1

The End!