Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013449.1 Corchorus capsularis cultivar CVL-1 contig13470, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91941

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8219--8245
1
27.0
1
100
0
54
0
0
0
100
0.00
12495--12542
12
4.0
12
86
0
69
16
0
52
31
1.45
16291--16351
31
2.0
31
90
0
95
16
21
27
34
1.95
22790--22830
14
3.1
14
80
20
61
48
0
14
36
1.44
24919--24945
6
4.5
6
100
0
54
51
0
33
14
1.43
28810--28866
25
2.4
24
88
5
80
56
22
15
5
1.60
29316--29401
44
2.0
44
95
0
154
29
26
12
31
1.93
29583--29610
2
14.0
2
100
0
56
50
0
0
50
1.00
29785--29953
49
3.3
49
64
11
133
22
26
3
47
1.67
29757--29965
103
2.0
105
95
1
377
22
27
2
46
1.66
31542--31593
17
3.1
17
97
0
95
28
5
32
32
1.81
38790--38818
15
1.9
15
100
0
58
34
0
20
44
1.52
44728--44757
15
2.1
14
93
6
51
73
0
26
0
0.84
58585--58616
16
2.0
16
93
0
55
31
9
31
28
1.88
58601--58778
70
2.5
70
99
0
347
33
14
23
28
1.94
60364--60418
12
4.5
12
84
4
74
27
20
14
38
1.91
60376--60423
25
2.0
24
84
8
62
22
20
16
39
1.92
71179--71256
29
2.6
30
76
15
90
16
14
29
39
1.88
72798--72828
13
2.4
13
94
0
53
29
19
16
35
1.93
81414--81440
6
4.5
6
100
0
54
51
0
14
33
1.43
90922--90995
32
2.3
32
88
0
103
13
47
32
6
1.69
90952--91104
32
4.7
33
82
3
166
14
35
36
13
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90966--91104
34
4.2
34
83
3
135
13
33
38
15
1.86

Tables:   1

The End!