Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013451.1 Corchorus capsularis cultivar CVL-1 contig13472, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50049

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7120--7166
6
7.5
6
84
15
60
55
14
0
29
1.40
7125--7166
7
6.3
7
91
2
61
54
14
0
30
1.40
7163--7197
13
2.7
13
91
8
54
62
8
11
17
1.52
10338--10409
21
3.3
22
74
14
69
13
20
50
15
1.78
13947--13992
15
3.1
15
87
0
74
15
28
0
56
1.39
14175--14210
7
5.3
7
90
3
56
55
13
0
30
1.39
14207--14241
13
2.7
13
91
8
54
62
8
11
17
1.52
15151--15175
10
2.5
10
100
0
50
24
8
20
48
1.76
18168--18248
33
2.5
33
79
4
92
25
38
27
8
1.85
23846--23895
23
2.2
23
81
0
55
24
36
30
10
1.88
27351--27375
11
2.3
11
100
0
50
16
8
32
44
1.76
29584--29613
13
2.3
13
100
0
60
43
13
30
13
1.82
34658--34702
18
2.4
19
92
3
74
26
11
2
60
1.42
34675--34713
4
9.2
4
83
10
51
25
5
0
69
1.09
38116--38155
20
1.9
22
90
10
66
35
20
22
22
1.96
43389--43429
2
22.0
2
85
14
61
48
0
0
51
1.00
46691--46973
22
13.0
22
70
11
102
36
15
8
39
1.78
46722--46819
45
2.2
45
85
3
126
37
14
8
39
1.76
46748--46827
23
3.5
23
82
1
99
38
12
6
42
1.68
46832--46979
44
3.4
43
80
10
133
33
16
8
41
1.79
46733--46932
104
1.9
106
81
6
246
34
16
8
41
1.78
47071--47317
22
11.3
22
72
11
125
32
14
10
42
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47074--47218
66
2.2
65
79
6
148
33
14
10
41
1.80
47071--47466
22
17.8
22
69
13
123
33
16
9
39
1.82
47657--47711
22
2.5
23
80
11
71
30
12
9
47
1.73
47749--48014
22
11.8
22
66
22
74
35
15
9
39
1.80
48384--48441
22
2.6
22
81
5
73
39
17
6
36
1.76
49785--49876
38
2.5
37
78
7
105
54
7
19
18
1.67

Tables:   1

The End!