Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013454.1 Corchorus capsularis cultivar CVL-1 contig13475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3687
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:373 original size:16 final size:16

Alignment explanation


    Indices: 352--384  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        342 AAAATTTTTA

                            
        352 TGGATTTCTATACATG
          1 TGGATTTCTATACATG

                            
        368 TGGATTTCTATACATG
          1 TGGATTTCTATACATG

             
        384 T
          1 T

        385 AGACTCTCTA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.24, C:0.12, G:0.18, T:0.45


Consensus pattern (16 bp):   
TGGATTTCTATACATG

Found at i:1444 original size:21 final size:21

Alignment explanation


    Indices: 1388--1436  Score: 89
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1378 ATCATGGCCT

                                 
       1388 TTGGCTTACTCCTTTGGTGCG
          1 TTGGCTTACTCCTTTGGTGCG

                               * 
       1409 TTGGCTTACTCCTTTGGTGTG
          1 TTGGCTTACTCCTTTGGTGCG

                   
       1430 TTGGCTT
          1 TTGGCTT

       1437 CCATCTTTTG


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.04, C:0.20, G:0.29, T:0.47


Consensus pattern (21 bp):   
TTGGCTTACTCCTTTGGTGCG
Done.