Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013459.1 Corchorus capsularis cultivar CVL-1 contig13480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37132

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
753--818
26
2.5
27
92
2
107
43
21
18
16
1.87
753--827
26
2.8
26
89
2
105
40
22
20
17
1.92
5814--5842
13
2.2
13
100
0
58
55
0
13
31
1.39
5736--5916
100
1.9
93
84
12
242
46
2
15
35
1.58
12695--12727
17
1.9
17
100
0
66
27
6
36
30
1.81
16710--16734
8
3.1
8
100
0
50
24
12
12
52
1.72
21950--22004
21
2.7
21
80
8
60
21
20
18
40
1.92
24967--25249
135
2.1
135
87
0
406
18
26
26
28
1.98
26350--26390
21
2.0
21
95
0
73
21
14
31
31
1.94
28795--28874
35
2.2
35
84
6
97
31
32
5
31
1.79
30606--30650
19
2.3
19
96
3
81
24
26
15
33
1.95
31968--32052
41
2.1
41
97
0
161
28
15
15
41
1.87
33790--33841
26
2.0
27
92
3
88
26
53
11
7
1.63
33878--33977
32
3.1
32
78
9
80
32
35
21
12
1.90
33878--33986
48
2.3
48
82
6
123
31
35
22
11
1.89
33895--33996
16
6.4
16
69
17
68
31
35
20
12
1.90
34114--34160
21
2.2
21
92
0
76
29
8
6
55
1.55
34606--34650
16
2.8
17
86
6
58
31
40
24
4
1.75
34622--34682
23
2.6
22
79
7
68
37
37
18
6
1.76
35215--35255
16
2.6
16
100
0
82
53
7
17
21
1.67
37086--37132
2
23.5
2
91
8
78
51
2
0
46
1.13

Tables:   1

The End!