Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001346.1 Corchorus capsularis cultivar CVL-1 contig01346, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:999 original size:16 final size:16

Alignment explanation


    Indices: 967--999  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        957 TTGTTTTTGT

                        *   
        967 AGTCTTCTAAAAGAAA
          1 AGTCTTCTAAAAAAAA

                            
        983 AGTCTTCTAAAAAAAA
          1 AGTCTTCTAAAAAAAA

             
        999 A
          1 A

       1000 ATNGGAGANC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24


Consensus pattern (16 bp):   
AGTCTTCTAAAAAAAA
Done.