Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013461.1 Corchorus capsularis cultivar CVL-1 contig13482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23727

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
866--916
25
2.0
26
96
3
95
27
27
17
27
1.98
935--1121
22
8.5
22
76
12
129
35
14
9
40
1.79
935--1038
43
2.4
44
82
10
133
38
13
10
37
1.79
935--1082
44
3.4
42
81
11
156
39
13
9
37
1.77
935--1122
43
4.3
43
79
7
132
35
14
9
40
1.78
1059--1146
43
2.0
44
82
6
108
27
19
7
45
1.78
1766--1810
18
2.7
16
80
12
54
68
6
8
15
1.36
13096--13132
19
2.0
18
89
5
56
29
21
8
40
1.82
16104--16140
18
2.1
18
100
0
74
27
21
27
24
1.99
19975--20271
55
5.4
55
94
1
497
50
7
17
24
1.72
19975--20271
111
2.7
109
93
1
495
50
7
17
24
1.72
20502--20548
24
2.0
24
91
0
76
42
4
17
36
1.68
20730--20959
26
8.7
26
72
20
131
52
3
23
20
1.61
20805--20894
28
3.1
27
74
22
76
55
2
22
20
1.54
20810--20868
32
1.9
31
86
13
86
57
0
22
20
1.41

Tables:   1

The End!