Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013463.1 Corchorus capsularis cultivar CVL-1 contig13484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65156

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102--155
2
27.0
2
79
7
56
42
3
3
50
1.38
1099--1149
18
2.7
19
76
8
52
62
1
9
25
1.36
2103--2127
2
12.5
2
100
0
50
52
0
0
48
1.00
5108--5156
24
2.0
25
96
4
91
63
8
0
28
1.23
5489--5555
33
2.0
33
88
0
98
25
19
22
32
1.97
8579--8631
27
2.1
26
83
13
67
41
3
0
54
1.18
11768--11804
2
20.0
2
84
15
53
51
0
0
48
1.00
12068--12124
23
2.6
23
88
5
82
28
14
10
47
1.76
16933--17095
32
4.8
32
66
14
94
46
6
23
23
1.74
16881--17134
104
2.4
104
95
0
454
49
5
22
23
1.70
17230--17284
16
3.4
16
80
9
76
58
3
20
18
1.54
17205--17287
32
2.6
32
92
0
130
50
2
26
20
1.60
17230--17291
16
3.9
16
75
21
60
54
3
20
20
1.58
17239--17357
32
3.6
32
78
13
109
55
4
20
20
1.60
17291--17359
35
1.9
36
94
2
122
57
4
18
18
1.56
17357--17418
32
1.9
33
90
3
99
53
3
17
25
1.59
17397--17450
26
2.1
26
89
6
83
55
1
14
27
1.50
17452--17530
7
11.1
7
79
2
77
59
2
22
15
1.48
17445--17589
14
11.0
14
68
20
89
54
4
22
17
1.62
17601--17686
21
4.1
21
75
10
86
47
4
25
22
1.70
17815--17874
16
3.6
16
78
8
66
48
0
25
26
1.52
18521--18553
5
6.8
5
86
6
50
42
0
0
57
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19505--19546
19
2.2
20
86
4
59
47
11
11
28
1.76
19570--19613
22
2.0
22
95
4
81
50
0
13
36
1.42
28298--28339
19
2.2
20
86
4
59
47
11
11
28
1.76
28362--28406
23
2.0
22
91
8
74
51
0
13
35
1.41
28481--29394
445
2.1
437
81
8
1034
42
12
15
29
1.84
32680--32843
82
2.0
82
96
0
301
29
19
17
33
1.94
34755--34788
16
2.1
16
100
0
68
47
17
23
11
1.81
43903--44350
167
2.7
165
81
4
488
41
14
14
29
1.86
45679--45716
11
3.2
12
85
14
53
42
5
7
44
1.56
46615--46661
23
2.0
23
100
0
94
21
36
29
12
1.91
48901--48957
29
1.9
30
85
3
80
24
28
8
38
1.85
57994--58062
33
2.1
33
94
2
122
24
17
28
28
1.97
62198--62456
131
2.0
131
95
0
464
48
6
10
34
1.64
62663--62689
13
2.1
13
100
0
54
44
14
0
40
1.46
62799--62840
19
2.3
18
84
8
57
61
0
4
33
1.17
62804--62840
19
2.0
19
89
5
58
64
0
2
32
1.07
63805--63830
10
2.6
10
100
0
52
50
19
7
23
1.73
65084--65143
28
2.3
26
88
8
86
53
6
13
26
1.64

Tables:   1

The End!