Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013470.1 Corchorus capsularis cultivar CVL-1 contig13491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96489

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
707--738
2
16.0
2
100
0
64
50
0
0
50
1.00
27975--28051
41
2.0
40
89
7
122
54
11
10
23
1.67
28729--28757
2
14.5
2
100
0
58
48
0
0
51
1.00
28912--28937
2
13.0
2
100
0
52
50
0
0
50
1.00
32507--32536
15
2.1
14
93
6
51
36
3
13
46
1.60
36304--36332
13
2.1
14
93
6
51
62
0
0
37
0.96
37488--37522
11
3.2
11
83
0
52
77
17
5
0
0.96
44269--44325
21
2.7
21
88
0
78
15
28
19
36
1.92
53358--53730
48
7.9
47
70
12
190
17
18
26
37
1.93
54217--54332
48
2.4
47
76
2
115
18
19
23
38
1.93
56120--56270
77
2.0
77
90
0
239
22
13
18
45
1.85
64734--64763
5
6.0
5
100
0
60
80
0
20
0
0.72
78942--79006
33
2.0
32
82
8
78
27
23
9
40
1.85
80282--80338
27
2.1
27
81
12
64
42
10
17
29
1.83
85687--85744
29
2.0
30
83
10
75
27
13
31
27
1.94
85877--85912
14
2.6
14
87
12
56
19
8
0
72
1.10
90054--90087
17
1.9
17
88
5
50
14
20
14
50
1.78
96464--96489
11
2.4
11
100
0
52
15
26
0
57
1.38

Tables:   1

The End!