genome.fa.s13474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013474.1 Corchorus capsularis cultivar CVL-1 contig13495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34318

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--52	2	24.0	2	100	0	96	0	50	0	50	1.00
3336--3716	189	2.0	189	100	0	762	35	18	16	29	1.93
7172--7266	48	2.0	48	95	0	172	18	29	16	34	1.94
17533--17578	25	1.9	25	86	8	69	56	2	0	41	1.11
17561--17590	14	2.1	14	93	0	51	70	0	0	30	0.88
21774--21812	2	18.0	2	85	15	51	46	7	0	46	1.31
21774--21812	9	4.5	8	90	9	51	46	7	0	46	1.31
21771--21812	13	3.2	13	96	3	75	45	9	0	45	1.36
23174--24201	201	5.2	194	83	7	1186	33	13	17	35	1.89
24945--25008	27	2.3	27	94	2	110	6	29	7	56	1.52
26540--26939	139	2.9	139	82	5	477	43	8	11	36	1.71
30257--30294	14	2.6	15	91	4	60	50	13	7	28	1.69
30257--30308	14	3.6	14	80	17	54	48	11	9	30	1.72
30277--30316	13	3.1	14	86	10	50	45	10	12	32	1.75
31889--31922	12	2.8	12	86	0	50	50	20	0	29	1.49
32087--32510	37	11.6	37	78	10	446	22	16	16	45	1.85
32085--32531	74	6.1	74	92	3	746	22	16	15	45	1.85
32342--32399	30	2.0	29	86	10	82	24	12	18	44	1.84
32302--32511	67	3.0	66	88	11	330	22	15	17	44	1.86
32085--32511	141	3.0	141	94	2	710	22	16	16	45	1.85
32371--32531	37	4.4	37	80	10	186	24	15	15	44	1.85
32550--32666	43	2.7	43	79	10	114	41	18	5	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32675--32733	28	2.1	28	90	0	91	37	22	10	30	1.87
32557--33288	148	4.9	148	93	2	1143	40	18	7	33	1.79
32787--33422	35	17.3	35	67	14	212	39	19	8	33	1.80
32826--32884	28	2.1	28	90	0	91	37	22	10	30	1.87
32588--33288	301	2.3	295	92	3	1163	40	18	7	33	1.79
33007--33103	42	2.3	43	84	8	119	38	20	7	34	1.80
33007--33115	43	2.6	42	84	7	123	35	20	8	35	1.82
32743--33304	78	7.5	76	67	18	363	39	18	7	33	1.80
33129--33185	28	2.0	28	86	0	78	38	22	10	28	1.87
33155--33251	42	2.3	43	85	8	128	37	21	9	31	1.85
33155--33263	43	2.6	42	85	7	132	34	21	10	33	1.87
33319--33422	34	3.1	34	87	1	138	39	21	7	31	1.81

Tables:   1

The End!